View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_31 (Length: 377)
Name: NF12882_high_31
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_31 |
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Alignment Details
Target: chr3 (Bit Score: 309; Significance: 1e-174; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 32644145 - 32644465
Alignment:
| Q |
19 |
catgttacaaaattcattttttgtatttatcacatgcgtatcaaagagcataaacatgcatataaatcctcactgcattatttacatagattacaaactc |
118 |
Q |
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| T |
32644145 |
catgttacaaaattcattttttgtatttatcacatgcgtatcaaagagcataaacatgcatataaatcctcactgcattatttacataggttacaaactc |
32644244 |
T |
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| Q |
119 |
aacttgcccctacttgtatatatgctcaatacaagtacgtagtaattacaatgcatgacaaatttccgtaggctcaaaatctctaggcacattctgattt |
218 |
Q |
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| T |
32644245 |
aacttgcccctacttgtatatatgctcaatacaagtacgtagtaattacaatgtatgacaaatttccgtaggctcaaaatctctaggcacattctgattt |
32644344 |
T |
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| Q |
219 |
gattagagccaaatgctctacattcattgtacttcctacatgcaattgtgacattttctccaatgattatggaccaacaagaagtcactgactagttaaa |
318 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
32644345 |
gattagagccaaatgctctacattcattgtacttcctacatgcaattgtgacattttctccaatgattatggaccaacaagaagtcattgactagttaaa |
32644444 |
T |
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| Q |
319 |
ccgttattgctacatacaact |
339 |
Q |
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||||||||||||||||||||| |
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| T |
32644445 |
ccgttattgctacatacaact |
32644465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 339 - 367
Target Start/End: Original strand, 32644482 - 32644510
Alignment:
| Q |
339 |
tttgttgggctcctctaatttatcctttg |
367 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
32644482 |
tttgttgggctcctctaatttatcctttg |
32644510 |
T |
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