View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_35 (Length: 350)
Name: NF12882_high_35
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_35 |
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Alignment Details
Target: chr5 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 5 - 349
Target Start/End: Original strand, 42285686 - 42286018
Alignment:
| Q |
5 |
cacatatgacatgattaatatacaatatatattcgaatagtatataaactagaaaacattaaacaagcataaaaataaaatctaccctccctcttcatcg |
104 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
42285686 |
cacacatgacatgattaatatacaatatatattcgaatagtatataaactagaaaacattaaa------------taaaatctaccctccctcttcatcg |
42285773 |
T |
|
| Q |
105 |
agttgttatgcattgtctagctacaagagaaccatttggtggaccagtcatctcaatctggcacacactatgaagccaaaaagatgaatgtaaaatccac |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42285774 |
agttgttatgcattgtctagctacaagagaaccatttggtggaccagtcatctcaatctggcacacactatgaagccaaaaagatgaatgtaaaatccac |
42285873 |
T |
|
| Q |
205 |
atattaaccttcaccttaaatgttccctttgcatagcaactcaacctattgttttgcaattccctttgaagtctcacaccaacttcttgaggcataaaaa |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42285874 |
atattaaccttcaccttaaatgttccctttgcatagcaactcaacctattgttttgcaattccctttgaagtctcacaccaacttcttgaggcataaaaa |
42285973 |
T |
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| Q |
305 |
gcaaagttgatataaaccttaccgtttcatatctagtttcctttg |
349 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42285974 |
gcaaagttgatataaaccttaccgtttcatatctagtttcctttg |
42286018 |
T |
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