View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_37 (Length: 327)
Name: NF12882_high_37
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_37 |
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Alignment Details
Target: chr4 (Bit Score: 307; Significance: 1e-173; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 1 - 315
Target Start/End: Complemental strand, 51023454 - 51023140
Alignment:
| Q |
1 |
caataatgatcttcctaccagtgagaccagcatcaccgtgaggacctccaatgacaaaacggccagaagggttcaagtgaaaaatggtcttggaatcaag |
100 |
Q |
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| T |
51023454 |
caatgatgatcttcctaccagtgagaccagcatcaccgtgaggacctccaatgacaaaacggccagaagggttcaagtgaaaaatggtcttggaatcaag |
51023355 |
T |
|
| Q |
101 |
gtacttgtcaggaatcacgggcttgataacatgctctttgagatcagcagcaatttcatcattggtaacagtctcatcatgttgagtagagatgagcaca |
200 |
Q |
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| T |
51023354 |
gtacttgtcaggaatcacgggcttgataacatgctctttgagatcagcagcaatttcatcattggtaacagtctcatcatgttgagtagagatgagcaca |
51023255 |
T |
|
| Q |
201 |
gtgtggacacgaacaggaaccatagcaccattgtcattgtaatactcaacagtgacttgagtctttccatcaggtctcaaccaagggcatgtaccattct |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
51023254 |
gtgtggacacgaacaggaaccatagcaccattgtcattgtaatactcaacagtgacttgagtcttaccatcaggtctcaaccaagggcatgtaccattct |
51023155 |
T |
|
| Q |
301 |
tgcgaacctcagtga |
315 |
Q |
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||||||||||||||| |
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| T |
51023154 |
tgcgaacctcagtga |
51023140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 9e-64; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 24 - 315
Target Start/End: Original strand, 20525495 - 20525786
Alignment:
| Q |
24 |
agaccagcatcaccgtgaggacctccaatgacaaaacggccagaagggttcaagtgaaaaatggtcttggaatcaaggtacttgtcaggaatcacgggct |
123 |
Q |
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| T |
20525495 |
agaccagcgtcaccgtgaggaccaccgatgacgaaacggcctgaagggttcaagtggaagatggttttctcatcaaggtacttctctgggatcacgggct |
20525594 |
T |
|
| Q |
124 |
tgataacatgctctttgagatcagcagcaatttcatcattggtaacagtctcatcatgttgagtagagatgagcacagtgtggacacgaacaggaaccat |
223 |
Q |
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| T |
20525595 |
tgatcacatgttccttcaaatcagctgcaatttcgtcattggtgacagtttcatcgtgctgtgttgagataaggacagtatggacacggatcggaaccat |
20525694 |
T |
|
| Q |
224 |
agcaccattgtcattgtaatactcaacagtgacttgagtctttccatcaggtctcaaccaagggcatgtaccattcttgcgaacctcagtga |
315 |
Q |
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| T |
20525695 |
ggcgcccttgtcattgaaatactcaatagtgacttgggtctttccatcaggtctcaaccaagggcatgttccgttcttgcgaacttcagtga |
20525786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 94; Significance: 7e-46; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 21 - 310
Target Start/End: Complemental strand, 45208430 - 45208141
Alignment:
| Q |
21 |
gtgagaccagcatcaccgtgaggacctccaatgacaaaacggccagaagggttcaagtgaaaaatggtcttggaatcaaggtacttgtcaggaatcacgg |
120 |
Q |
| |
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|||||||| |||||||| || ||||| ||||||||||| || ||||||||||| | ||| || || ||||| ||| | |||||| || ||||| || | |
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| T |
45208430 |
gtgagaccggcatcaccatggggaccaccaatgacaaagcgtccagaagggttaaggtggaagattgtcttctcatccaagtacttctcgggaataacag |
45208331 |
T |
|
| Q |
121 |
gcttgataacatgctctttgagatcagcagcaatttcatcattggtaacagtctcatcatgttgagtagagatgagcacagtgtggacacgaacaggaac |
220 |
Q |
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| T |
45208330 |
gcttgataacatgttccttaagatcagcagcaatctggtcgttactgacagtctcgtcgtgttgagtagaaatgaggacagtgtggacacgaactggaac |
45208231 |
T |
|
| Q |
221 |
catagcaccattgtcattgtaatactcaacagtgacttgagtctttccatcaggtctcaaccaagggcatgtaccattcttgcgaacctc |
310 |
Q |
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||||||||| || |||||||| ||||| | || ||||| ||||| || |||||||||||||||| ||| ||||||||||| | |||||| |
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| T |
45208230 |
catagcaccgttctcattgtagtactcgatggtaacttgtgtcttgccgtcaggtctcaaccaagcgcaggtaccattcttcctaacctc |
45208141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 41213550 - 41213277
Alignment:
| Q |
1 |
caataatgatcttcctaccagtgagaccagcatcaccgtgaggacctccaatgacaaaacggccagaagggttcaagtgaaaaatggtcttggaatcaag |
100 |
Q |
| |
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||||||||||||||||||||||||| || ||||| || ||||| || ||||| ||||| || ||||| || || | || || || |||||| |||||| |
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| T |
41213550 |
caataatgatcttcctaccagtgagtcctgcatctccatgaggtccaccaataacaaaccgaccagatggattgagatggaagatagtcttgtcatcaag |
41213451 |
T |
|
| Q |
101 |
gtacttgtcaggaatcacgggcttgataacatgctctttgagatcagcagcaatttcatcattggtaacagtctcatcatgttgagtagagatgagcaca |
200 |
Q |
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||| || | || || || || || || ||||||||||| | ||| |||||||||| ||||| || ||||| ||||| || ||||| |||||||| || |
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| T |
41213450 |
gtattttgctgggataacaggtttaatcacatgctcttttaaatctgcagcaattttttcatttgtgacagtttcatcgtgctgagttgagatgaggacg |
41213351 |
T |
|
| Q |
201 |
gtgtggacacgaacaggaaccatagcaccattgtcattgtaatactcaacagtgacttgagtctttccatcagg |
274 |
Q |
| |
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||||| ||||| | || ||||| || || || ||||| | ||||||||||| ||||| || || |||||||| |
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| T |
41213350 |
gtgtgcacacggattgggaccatggctccgttatcattctggtactcaacagtaacttgggttttaccatcagg |
41213277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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