View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_39 (Length: 312)
Name: NF12882_high_39
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_39 |
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Alignment Details
Target: chr7 (Bit Score: 154; Significance: 1e-81; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 175
Target Start/End: Original strand, 32907343 - 32907519
Alignment:
| Q |
1 |
aaaacagatatgaatgaataaatcaatgaaaatcctgacaaaatactctcactttat--cctatattatgtgtgaaccactcaataatcctcccattaat |
98 |
Q |
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| T |
32907343 |
aaaacagatatgaatgaataaatcaatgaaaatcctgacaaaatactctcactttatatcctatattatgtatgaaccactcaataatcctcccactaat |
32907442 |
T |
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| Q |
99 |
tgtcactcctctcttggttagcaaatcagcagaattgttggcttccctattcactcctctcttttgtattttctgtc |
175 |
Q |
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| T |
32907443 |
tgtcactcctctcttggttagcaaatcagcagaattgttggcttccctgttcactcctctcttttgtattttctgtc |
32907519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 188 - 312
Target Start/End: Original strand, 32907580 - 32907704
Alignment:
| Q |
188 |
tgtagcatgtcttaaaacttaatatattaaaccttatatggagggtattctgccattggatggatttgcttccaggtaactgtaatgaaatactactggc |
287 |
Q |
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||||||||||||||||||||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
32907580 |
tgtagcatgtcttaaaacttaatgtattaaactttatatggagggtattcttccattggatggatttgcttccaggtaattgtaatgaaatactactggc |
32907679 |
T |
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| Q |
288 |
tttaccctattgaaatctgtagtct |
312 |
Q |
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|||| |||| ||||||| |||||| |
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| T |
32907680 |
tttatactatcgaaatctttagtct |
32907704 |
T |
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