View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_4 (Length: 735)
Name: NF12882_high_4
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 251 - 724
Target Start/End: Complemental strand, 23879667 - 23879202
Alignment:
| Q |
251 |
ttagtatgaagttaatatcaagttattatcaatcatattcgaagttctattatttttctcctttatctaaaattcataacttctacaagaccgcttgcat |
350 |
Q |
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| T |
23879667 |
ttagtatgatgttaatatcaagttattatcaatcatattcgaagttctattatttttctcctttatctaaaatccatatcttcaacaagaccacttgcat |
23879568 |
T |
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| Q |
351 |
aaagaatttccca-aacaatgttattcccaagctacaaggtccgaccaaaagacatgactggttggcaaaatatgaatggggggatatagatgtttcaaa |
449 |
Q |
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| T |
23879567 |
aaagaattgcccacaacaatgctatt-ccaagctacaaggtcccatcaaaagacatgactagttggcataatatgaatggggggatatagatgtttcaaa |
23879469 |
T |
|
| Q |
450 |
tcagcccatatggaaacaaattacagtaataatttaacagaacaattttcaatttgtaaaaacatttcaggaaaattttcaattcttagaatctgttgtg |
549 |
Q |
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| T |
23879468 |
tcagccc--atggaaacaacttagaataataatttaacagtacaattataaatttgcaaaaacatttcaggaaaattttcaattcttagaatctgttgtg |
23879371 |
T |
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| Q |
550 |
tcaagtcacatgttaaaatctcaaaaactattaaacattctagatattagcaataatcatagaggctaaaaaatgtgagtagatagcaactgcaaatgag |
649 |
Q |
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| T |
23879370 |
tcaaatcatatgttaaaatcttaaaa--taagaaacattctagatattagcaataatcattgaggctcaaaaatgtgagtaaatagcaactgcaaatgag |
23879273 |
T |
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| Q |
650 |
taaatataataatacggctacttgtatgtatatagatccatcactaagtataagtacttacccgttgcagtgaac |
724 |
Q |
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| T |
23879272 |
taaatataataacagggcaact----tgtatatagatccatcactaagtatcagtacttacccgttgctgtgaac |
23879202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 158; E-Value: 1e-83
Query Start/End: Original strand, 18 - 234
Target Start/End: Complemental strand, 23879933 - 23879715
Alignment:
| Q |
18 |
ccaacaagcttaaagcttaccaagctttagcttgcggagg---gttagaatattagaacttttcttataacatattcatgttatgttatagaatcttagt |
114 |
Q |
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| T |
23879933 |
ccaacaagcttaaagcttactaagctttagcttgcggaggagtgttagaatattagaa-ttttcttataacatatttatgttatgttatagaatcttagt |
23879835 |
T |
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| Q |
115 |
ttttctcgtaatatcagtttgtgatgttagcgtattttagatcatctcttatgattattagtttctatataactaatgtattattatgatttgtttccta |
214 |
Q |
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| T |
23879834 |
ttttctagtaatatcagtttgtgatgttagagtatcttagattatgtcttatgattattagtttctatataactaaggtattattatgatttgtatccta |
23879735 |
T |
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| Q |
215 |
ggtctgcctatttaattggc |
234 |
Q |
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| T |
23879734 |
gggctgcctatttaattggc |
23879715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 254 - 310
Target Start/End: Complemental strand, 28907729 - 28907672
Alignment:
| Q |
254 |
gtatgaagttaatatcaagttattatcaatcatattcgaagttc-tattatttttctc |
310 |
Q |
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| T |
28907729 |
gtatgaagttagtatcaagttattatcgataatattcgaagttcttattatttttctc |
28907672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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