View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_40 (Length: 292)
Name: NF12882_high_40
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_40 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 277
Target Start/End: Complemental strand, 18092836 - 18092570
Alignment:
| Q |
11 |
cagagaaaacaaaccagcaataagtgttcaatctcatctttatccatctcaatcttcccatcatccaaagaaatattgagcaaagcatctagaacatcat |
110 |
Q |
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| T |
18092836 |
cagagaaaacataccagcaataagtgttcaatctcatctttatccatctcaatcttcccatcatccaaagaaatattgagcaaagcatctagaacatcat |
18092737 |
T |
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| Q |
111 |
cattcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaatctcctaaaaatactcaaaaccttcttaacagaaacaacagaacgcct |
210 |
Q |
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| T |
18092736 |
cattcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaaactcctaaatatactcaaaaccttcttaacagaaacaacagaacgcct |
18092637 |
T |
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| Q |
211 |
tctaataccttgcaaatcaaaaaccttcaacataggnnnnnnntccgacaaattcggtgctccaact |
277 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
18092636 |
tctaataccttgcaaatcaaaaaccttcaacataggaaaaaaatccgacaaattcggtgctccaact |
18092570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 14 - 277
Target Start/End: Complemental strand, 18102977 - 18102714
Alignment:
| Q |
14 |
agaaaacaaaccagcaataagtgttcaatctcatctttatccatctcaatcttcccatcatccaaagaaatattgagcaaagcatctagaacatcatcat |
113 |
Q |
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|||||||| |||| ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||| || |||||| ||| |
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| T |
18102977 |
agaaaacataccatcaacaaatgttcaatctcatctttatccatctcaatcttcccatcatccaaagaaatgttaagtaaagcatcaagcacatcaccat |
18102878 |
T |
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| Q |
114 |
tcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaatctcctaaaaatactcaaaaccttcttaacagaaacaacagaacgccttct |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |
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| T |
18102877 |
tcccaatagaaccagtaccttccctcatcttcaacctttccccaacaaatctcctaaatatactcaaaaccttcttaacagaaataacagaacgccttct |
18102778 |
T |
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| Q |
214 |
aataccttgcaaatcaaaaaccttcaacataggnnnnnnntccgacaaattcggtgctccaact |
277 |
Q |
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|||||||||||||||||||| ||||| |||||| || ||||||||||||||||||||| |
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| T |
18102777 |
aataccttgcaaatcaaaaatcttcagcataggaaaaaaatctgacaaattcggtgctccaact |
18102714 |
T |
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