View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_41 (Length: 279)
Name: NF12882_high_41
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_41 |
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Alignment Details
Target: chr3 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 259
Target Start/End: Original strand, 36793587 - 36793847
Alignment:
| Q |
1 |
cacacatgcactata--tatatttcaaagttgattaatgcatgagacatatatttcaagggtgatatatataggtgtcggggtatagaaattgaatgact |
98 |
Q |
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| T |
36793587 |
cacacatgcactatatatatatttcaaagttgattaatgcatgagacatatatttcaagggtgatatatataggtgtcggggtatagaaattgaatgact |
36793686 |
T |
|
| Q |
99 |
atacacgtgggaaatgagttacacatgtcaaaaactttggtatagcattgtagctctcattagtaacacgtacattttgtattgaaaatcaattaacacc |
198 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36793687 |
atacacgtgggaaatgagttacacatgtcaaaaacttttgtatagcattgtagctctcattagtaacacgtacattttgtattgaaaatcaattaacacc |
36793786 |
T |
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| Q |
199 |
acacagtaactcgatgtgtattttcacgtgccttctatttctttgcagctacatttgcttg |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36793787 |
acacagtaactcgatgtgtattttcacgtgccttctatttctttgcagctacatttgcttg |
36793847 |
T |
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