View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_48 (Length: 263)
Name: NF12882_high_48
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_48 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 22 - 253
Target Start/End: Complemental strand, 126965 - 126734
Alignment:
| Q |
22 |
gaatgtactgatcggaaagcatagatgcattctgcaaacaagcagtagagttctgttctgaatcgcatacagataagctggatttgtgggggtcatcagc |
121 |
Q |
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| T |
126965 |
gaatgtactgatcggaaagcatagatgcattctgcaaacaagcagtagagttctgttctgaatcgcatacagataagctggatttgtgggggtcatcagc |
126866 |
T |
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| Q |
122 |
attccctgcataatgtagctataaatactcataacataggaagaaaagatgtcataaatactcataaaagtaattgaaatatgtttacagttaaaaaatc |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| |
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| T |
126865 |
attccctgcataatgtagctataaatactcataacataggaagaaaagatgtcataaatactcataaaagtaattgaagtatgtttgcagttaaaaaatc |
126766 |
T |
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| Q |
222 |
aaaatcaaatccttacaacattagcatttcat |
253 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
126765 |
aaaatcaaatccttacaacattagcatttcat |
126734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 31 - 253
Target Start/End: Complemental strand, 33058637 - 33058415
Alignment:
| Q |
31 |
gatcggaaagcatagatgcattctgcaaacaagcagtagagttctgttctgaatcgcatacagataagctggatttgtgggggtcatcagcattccctgc |
130 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||| |
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| T |
33058637 |
gatcggaaagcatagatgcattctgcaaacaagcagtagagttctgttctgaaacgcatacagataagctggatttgtagaggtcatcagcattccctgc |
33058538 |
T |
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| Q |
131 |
ataatgtagctataaatactcataacataggaagaaaagatgtcataaatactcataaaagtaattgaaatatgtttacagttaaaaaatcaaaatcaaa |
230 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||| |
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| T |
33058537 |
ataatgtagctataaatactcataacataggaagaaaagatgtcataaatactcataaaagtaactgaagcatgtttgcagttaaaaaatcaaaatcaaa |
33058438 |
T |
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| Q |
231 |
tccttacaacattagcatttcat |
253 |
Q |
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||||||||||||||||||||||| |
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| T |
33058437 |
tccttacaacattagcatttcat |
33058415 |
T |
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