View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_49 (Length: 262)
Name: NF12882_high_49
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_49 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 23444965 - 23445224
Alignment:
| Q |
1 |
gagcatctgggttgcaggttttagactatgacatatgtccactacacaagtagtcaagtcagggacccacccacccccacacaactttgttgcactttga |
100 |
Q |
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| T |
23444965 |
gagcatctgggttgcaggttttagactatgacatatgtccactacacaagtagtcaagtcagggacccacccacccccacacaactttgttgcactttga |
23445064 |
T |
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| Q |
101 |
tgtacgaaaacgcgtcaataatgtgtatgaaaattgaaaggaagtagtccccagccccacactctctgctgctgaactttcaaagaagttgcacataaca |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
23445065 |
tgtacgaaaacgcgtcaataatgtgtatgaaaattgaaaggaagtagtccccagccccaca--ctctgctgctgaactttcaaagaagttgcacataaca |
23445162 |
T |
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| Q |
201 |
tagtttatcaagagtaaagtagagaaatgtgttctataaagcaaaggttaagacattagtct |
262 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23445163 |
tagtttatcaagagtaaagtagagaaatgtgttctataaagcaaaggttaagacattagtct |
23445224 |
T |
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