View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_50 (Length: 254)
Name: NF12882_high_50
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_50 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 1224446 - 1224680
Alignment:
| Q |
1 |
ctaagaagccacatgatcctattctttcagctaccgttgatctttcggagtattttcgcgataatgaagctgtttatgttggtttttcagcttctgctga |
100 |
Q |
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| T |
1224446 |
ctaagaagccacatgatcctattctttcagctaccgttgatctttcggggtattttcgcgataatgaagctgtttatgttggtttttcagcttctgctga |
1224545 |
T |
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| Q |
101 |
aaaaagtactgagcttcatcaaattgaaagatggagtttttacactgttgggtttgagcctgcaagacctaggttgcctagtcacaatgtttccgataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
1224546 |
aaaaagtactgagcttcatcaaattgaaagatggagtttttacactgttgggtttgagcctgcaagacctaggttgcgtagtcacaatgtttccgataat |
1224645 |
T |
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| Q |
201 |
tctgttggtgtaagtaccgggaatgaggtaaaagt |
235 |
Q |
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| T |
1224646 |
tctgttggtgtaagtaccgggaatgaggtaaaagt |
1224680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 41962972 - 41963206
Alignment:
| Q |
1 |
ctaagaagccacatgatcctattctttcagctaccgttgatctttcggagtattttcgcgataatgaagctgtttatgttggtttttcagcttctgctga |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
41962972 |
ctaagaagccacatgatcctattctttcagctaccgttgatctttcggagtatttttgtgataatgaagctgtttatgttggtttttcagcttctgctga |
41963071 |
T |
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| Q |
101 |
aaaaagtactgagcttcatcaaattgaaagatggagtttttacactgttgggtttgagcctgcaagacctaggttgcctagtcacaatgtttccgataat |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
41963072 |
aaaaagtactgagcttcatcaaattgaaagatggagtttttacactgttgggtttgagcctgcaagacctaggttgcgtagtcacaatgtttccgataat |
41963171 |
T |
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| Q |
201 |
tctgttggtgtaagtaccgggaatgaggtaaaagt |
235 |
Q |
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||||||||||||||||||||||||||||||||||| |
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| T |
41963172 |
tctgttggtgtaagtaccgggaatgaggtaaaagt |
41963206 |
T |
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