View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_53 (Length: 249)
Name: NF12882_high_53
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_53 |
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Alignment Details
Target: chr4 (Bit Score: 151; Significance: 5e-80; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 55 - 209
Target Start/End: Original strand, 33127355 - 33127509
Alignment:
| Q |
55 |
gttcaatttaattatttaatttaggttaacatgtctacaagtgagatcacgaaaatggaagaaggtgatcttaagacacaaacgaaaggagaatcagggt |
154 |
Q |
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| T |
33127355 |
gttcaatttaattatttaatttaggttaacatgtctacaagtgagatcacgaaaatggaagaaggtgatcttaagacacaaacaaaaggagaatcagggt |
33127454 |
T |
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| Q |
155 |
tttgcggttctcctgaggtagttcaaatcatacaaaaggtacacatattaataat |
209 |
Q |
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| T |
33127455 |
tttgcggttctcctgaggtagttcaaatcatacaaaaggtacacatattaataat |
33127509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 233
Target Start/End: Original strand, 33127539 - 33127571
Alignment:
| Q |
201 |
attaataatatatagttttcattgatgttattg |
233 |
Q |
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| T |
33127539 |
attaataatatatagttttcattgatgttattg |
33127571 |
T |
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