View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12882_high_8 (Length: 660)

Name: NF12882_high_8
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12882_high_8
NF12882_high_8
[»] chr3 (1 HSPs)
chr3 (19-647)||(44473530-44474159)


Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 19 - 647
Target Start/End: Complemental strand, 44474159 - 44473530
Alignment:
Q  19 gattgatccctttctcgcttcatcaatgatgtatgcagtattttggttgctttgggaaatgtaaaataacccgagggagtactatttatcaagtataata 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44474159 gattgatccctttctcgcttcatcaatgatgtatgtagtattttggttgctttgagaaatgtaaaataacccgagggagtactatttatcaagtataata 44474060  T
Q  119 aaattttgttattattctaagtcgttgtgtaattttatgagaattgatcggttgannnnnnnnnnnnnnn-gggtggttccttggaatgtctatggtttc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||| |||||||||||||||||||||||||    
T  44474059 aaattttgttattattctaagtcgttgtgtaattttatgagaattgatcggttgattttttttttttttttggggggttccttggaatgtctatggtttc 44473960  T
Q  218 gaggttgcttgtttattttagtaacagttttctttatgccactggatggctacaatgtggcagtctttgaaattggtgatgagtccggtgacttttgaag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473959 gaggttgcttgtttattttagtaacagttttctttatgccactggatggctacaatgtggcagtctttgaaattggtgatgagtccggtgacttttgaag 44473860  T
Q  318 agtctccgtaatgttcgagtaggggcttacaaattgtactcctttcacagacaatggatgtgtttatgctactggtctcaatgattttggacagctcggt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473859 agtctccgtaatgttcgagtaggggcttacaaattgtactcctttcacagacaatggatgtgtttatgctactggtctcaatgattttggacagctcggt 44473760  T
Q  418 acatcggagagtaaaccctactcagttgtatgattactttgccttttttcctgtatttttgtcaagtaaactgatgacaattgcaacatcttgttctttt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473759 acatcggagagtaaaccctactcagttgtatgattactttgccttttttcctgtatttttgtcaagtaaactgatgacaattgcaacatcttgttctttt 44473660  T
Q  518 gctctaatgttcatgagtgcattacttgccagcattttcttgtttgcgatattttattcacttgtctgtaatgtttcaggtgccacttcaagtttttggg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473659 gctctaatgttcatgagtgcattacttgccagcattttcttgtttgcgatattttattcacttgtctgtaatgtttcaggtgccacttcaagtttttggg 44473560  T
Q  618 cacgagaagaaagttgtacggatctctgct 647  Q
    ||||||||||||||||||||||||||||||    
T  44473559 cacgagaagaaagttgtacggatctctgct 44473530  T

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