View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_high_9 (Length: 654)
Name: NF12882_high_9
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 532; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 532; E-Value: 0
Query Start/End: Original strand, 28 - 631
Target Start/End: Original strand, 30337226 - 30337831
Alignment:
| Q |
28 |
ccacccggcattgtttgccgttactcctactttcatcttcttcagtatcgcaaactaagatcacacgttgttgagatgaacttcggcaactatgatgccg |
127 |
Q |
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| T |
30337226 |
ccacccggcgttgtttgccgttactcctactttcatcttcttaagtatcgcaaactaagatcacacgttgttgagatgaacttcggcaactatgattccg |
30337325 |
T |
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| Q |
128 |
atgaaaaacaaaatcccaccctaccttgctcccataatgctacctttaactcaactcttttcacccctttcaactaccttggaaaactcatcttccgtga |
227 |
Q |
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| T |
30337326 |
atgaaaaacaaaatcccaccctaccttgctcccataatgctacctttaactcaactcttttcacccctttcaactaccttggaaaactcatcttccgtga |
30337425 |
T |
|
| Q |
228 |
atgcttcaacaaccgagaaaaccctatcattatctctctttccactttccctacaactctccaacaactcgttttcatagataacctttctcccattcag |
327 |
Q |
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| T |
30337426 |
atgcttcaacaaccgtgaaaatcctatcattatctctctttccactttccctacaactctccaacaactcgttttcatagataacctttctcccattcag |
30337525 |
T |
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| Q |
328 |
gcgtcgttctcatttgccgagtttggaatgattaataaacttcaaattgtcaggacacataaatctctggttaggaaagaaaaagaatgatagtttctga |
427 |
Q |
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| T |
30337526 |
gggtcgttctcatttgccgagtttggaatgattaataaacttcaaattgtcaggacacataaatctctggttgggaaagaaaaagaatgatagtttctga |
30337625 |
T |
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| Q |
428 |
tat----aagcacttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtttgttgtgacacctgaaattgc |
523 |
Q |
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| T |
30337626 |
tataagcaagcacttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtttgttgtaacacctgaaattcc |
30337725 |
T |
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| Q |
524 |
agatatgtactgtaatttcagagatttaattactagtttcctttatgttgtaagccttgagagccaattaagaagttaatcaaaaattagaattgtttta |
623 |
Q |
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| T |
30337726 |
agatatgtactgtaatttcagtgatttaattactagtttcctttatgttgtaagcctt--gagccaattaagaagttaatgaaaaatttgaattgtttta |
30337823 |
T |
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| Q |
624 |
ttattctg |
631 |
Q |
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| T |
30337824 |
ttattctg |
30337831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 30325581 - 30325642
Alignment:
| Q |
20 |
gcttcccaccacccggcattgtttgccgttactcctactttcatcttcttcagtatcgcaaa |
81 |
Q |
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| T |
30325581 |
gcttcccaccacccggcattgtttgccgttactcctactttcattttcttcagtatcgcaaa |
30325642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 183 - 325
Target Start/End: Original strand, 30325744 - 30325886
Alignment:
| Q |
183 |
tcttttcacccctttcaactaccttggaaaactcatcttccgtgaatgcttcaacaaccgagaaaaccctatcattatctctctttccactttccctaca |
282 |
Q |
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||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||| ||||||||| || | ||||||||||| |||||||| || |
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| T |
30325744 |
tctcttcacccctttcaactacctccgattactcaccttccgtgaatgcttcaacaacccagaaaaccccattaacctctctctttcccctttccctcca |
30325843 |
T |
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| Q |
283 |
actctccaacaactcgttttcatagataacctttctcccattc |
325 |
Q |
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| T |
30325844 |
tctctagaacatcttattttctttgacaacccttctcccattc |
30325886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 455
Target Start/End: Original strand, 30325962 - 30326004
Alignment:
| Q |
413 |
aatgatagtttctgatataagcacttttggctcaaaggctttt |
455 |
Q |
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| T |
30325962 |
aatgatagtttctcataaaagcacttttggctcaaaggctttt |
30326004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 560 - 612
Target Start/End: Original strand, 30321812 - 30321862
Alignment:
| Q |
560 |
tttcctttatgttgtaagccttgagagccaattaagaagttaatcaaaaatta |
612 |
Q |
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| T |
30321812 |
tttcctttatattgtaagccttgag--ccaattaagaagttaatgaaaaatta |
30321862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 435 - 502
Target Start/End: Original strand, 30333492 - 30333556
Alignment:
| Q |
435 |
acttttggctcaaaggcttttttcttttataatgtcttgtttgtttgaattccctaaagtcacttgtt |
502 |
Q |
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| T |
30333492 |
acttttggctcaaaggctttta-ctattaaa--gtctcgtttgtttgaatgccctaaagtcacttgtt |
30333556 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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