View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_1 (Length: 1025)
Name: NF12882_low_1
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 568; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 568; E-Value: 0
Query Start/End: Original strand, 428 - 1015
Target Start/End: Original strand, 36448120 - 36448707
Alignment:
| Q |
428 |
ccaaagcaagttagtggagataacattatttaacaaaggacattatcgtccatagataaaccacaagaaacaatcccttacacaaacatggaacaatggc |
527 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448120 |
ccaaagcaagttagtggagataacattatttaacaaaggacattatcgtccatagataaaccacaagaaacaatcccttacacaaacatggaacaatggc |
36448219 |
T |
|
| Q |
528 |
ggaactgaagtaaactagatagaaatcacaacctccatttccaaaaacctcataaacccacaaccttaaaaaaccttaccttaacttcatcattcatggc |
627 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448220 |
ggaactgaagtaaactagatagaaatcacaacctccatttccataaacctcataaacccacaaccttaaaaaaccttaccttaacttcatcattcatggc |
36448319 |
T |
|
| Q |
628 |
gaccaatctcccagaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatc |
727 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448320 |
gaccaatctcccagaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatc |
36448419 |
T |
|
| Q |
728 |
caacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactaccccttcccgattctcctatcctcatcccgaaccacgcgcttcgtagtttaa |
827 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36448420 |
caacgttggcttgacgaaggtcatcgtacttgtccaattaccaaactaccccttcctgattctcctatcctcatcccgaaccacgcgcttcgtagtttaa |
36448519 |
T |
|
| Q |
828 |
tttctagttacacactccttccaccacttcatcaaatcatttcacaacccgaaaccctaatttcaaccctaattttgaattcttcttcttccgattccaa |
927 |
Q |
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| T |
36448520 |
tctctagttacacactccttccaccacttcatcaaatcatttcacaacccgaaaccctaatttcaaccctaattttgaattcttcttcttccgattccaa |
36448619 |
T |
|
| Q |
928 |
aattgactcgcttcgtcaacttgctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctctgct |
1015 |
Q |
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| T |
36448620 |
aattgactcgcttcgtcaactcgctcgtctttctaaacgtgatgccagtttccgtcgtcgtcttgttgattccggtgccgtctctgct |
36448707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 210; E-Value: 1e-114
Query Start/End: Original strand, 17 - 346
Target Start/End: Original strand, 36447745 - 36448064
Alignment:
| Q |
17 |
caccatccatttatgagataaggggtaaatggagggattgccaattcaaggaaacctcccttgtattgaagcttctatagctttacaattattgccaaaa |
116 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
36447745 |
caccatccatttatgagata-ggggtaaatggagggattgcaaactcaagaaaacctcccttgtattgaagcttctatagctttacaattattgtcaaaa |
36447843 |
T |
|
| Q |
117 |
tttgattgatgaaattagttgtgtaaaacaaaactaaattccaaatgtgattttatgaacaatgttaacaattattttttgtcaaaataatatacaaaaa |
216 |
Q |
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| T |
36447844 |
tttgattgatgaaattaattgtgtaaaacgaaactaaaatccaaatgtgattttatgaacaatgttaacaaatattttttgtcaaaataatat------- |
36447936 |
T |
|
| Q |
217 |
ttcgatcaaaaattctatgtcagcaaacaataacatacattattattaaacctaatatttttatcgagtttgaactcaaaacatcataaatgaattttag |
316 |
Q |
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| T |
36447937 |
-----gcaaaaattctaggtcagcaaacaataacatatattattattaaacctaatatttttatcgagtttaaactcaaaatatcataaatgaattttag |
36448031 |
T |
|
| Q |
317 |
tga---ttgtcatttcaatcgcgacggtgagaa |
346 |
Q |
| |
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||| |||||||||||||| ||| |||||||| |
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| T |
36448032 |
tgatgtttgtcatttcaatcacgagggtgagaa |
36448064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 950 - 1011
Target Start/End: Original strand, 11446882 - 11446943
Alignment:
| Q |
950 |
gctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctc |
1011 |
Q |
| |
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| T |
11446882 |
gctcgtctttctaaacatgatgctaattttcgtcgccgtcttgttgattcaggtgccgtctc |
11446943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 950 - 1011
Target Start/End: Complemental strand, 2535366 - 2535305
Alignment:
| Q |
950 |
gctcgtctttctaaacgtgatgccagtttccgtcgccgtcttgttgattccggtgccgtctc |
1011 |
Q |
| |
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| T |
2535366 |
gctcgtctttctaaacgtgatgctaattttcgtcgttgtcttgttgattcaggtgccgtctc |
2535305 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 641 - 772
Target Start/End: Complemental strand, 2660305 - 2660174
Alignment:
| Q |
641 |
gaacacttcaaatgtccaatctcactcgaaataatgtccgacccagtcatcctctcttccggtcacacattcgatcgtccttcaatccaacgttggcttg |
740 |
Q |
| |
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|||||||| || || ||||| || || ||||| |||||||| || || |||||||| |||||||| || || || ||| |||||||||||| ||||||| |
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| T |
2660305 |
gaacacttgaagtgcccaatttcgcttgaaattatgtccgatccggttatcctctcctccggtcagacctttgaccgttcttcaatccaacaatggcttg |
2660206 |
T |
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| Q |
741 |
acgaaggtcatcgtacttgtccaattaccaaa |
772 |
Q |
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| T |
2660205 |
acctaggtcaccggaaatgtccaatcaccaaa |
2660174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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