View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12882_low_11 (Length: 619)
Name: NF12882_low_11
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_11 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 296; Significance: 1e-166; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 127 - 604
Target Start/End: Original strand, 56312756 - 56313227
Alignment:
| Q |
127 |
tgaatatattgaaaccgtgtatttgttggttttnnnnnnnntcaaccctagttttaaagagctatattatatattatgcatcttgattttgagtcgtctt |
226 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
56312756 |
tgaatatattgaaaccgtgtctttgttggttttaaaaaaa-tcaaccctagttttaaagagctatattatatattatgcatcttgattttgggtcgtctt |
56312854 |
T |
|
| Q |
227 |
ttttcagaatccataaatatatagtatacacacgcttgatttccaactaatcatagatccaaagctatagcacaccaaaaca--atagtagctagctgcg |
324 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
56312855 |
tt-tcagaatccataaatatatagtatacacacgcttgatttccatctaatcatagatccaaagctatagcacaccaaaacaatatagtagctagctgcg |
56312953 |
T |
|
| Q |
325 |
tgaaacttgcagccnnnnnnnnnnnnnnnntcaaattagttagaagccaagaatgcaagagggagagagtgagcaattaattattacgtgatagaaatta |
424 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56312954 |
tgaaacttgcagcc----atatatatatattcaaattagttagaagccaagaatgcaagagggagagagtgagcaattaattattacgtgatagaaatta |
56313049 |
T |
|
| Q |
425 |
aagaaagaaagagagtacaaattaaacagtgcctaaaatatattcatacaacaactatcaccgtttgtgattaatnnnnnnnnnnnnnnnnnncttttct |
524 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
|
|
| T |
56313050 |
aagaaagaaagagagtacaaattaaacagtacctaaaatatattcatacaacaactatcaccgtttgtgattaat--tctctctctctctctccttctct |
56313147 |
T |
|
| Q |
525 |
cgcatacatacatacacatgtactatttcatgcatgaatttttaaattctgaccacaaattaattaattcctttcatctc |
604 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
56313148 |
cgcatacatacatacacatgtactatttcatgcatgaattttaaaattctgaccacaaattaattaattcctttcatctc |
56313227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 19 - 114
Target Start/End: Original strand, 56312617 - 56312712
Alignment:
| Q |
19 |
atgagtatagattaccccaacatgaaaccgaacgatatcaaaaggtatataataattacttctccttaattaccaaatactactgctctaattcat |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
56312617 |
atgagtatagattaccccaacatgaaaccgaacgatatcaaaaggtatataataattacttctccttaattaccaaatattactgctctaattcat |
56312712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University