View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_14 (Length: 583)
Name: NF12882_low_14
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 171; Significance: 1e-91; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 213 - 522
Target Start/End: Complemental strand, 28565763 - 28565436
Alignment:
| Q |
213 |
tgttccatctaaaaaagggagtgcacctgcaaagaaagctgatatttctgaagaaga---------------ttc--atgaagacaaggtaatagacatt |
295 |
Q |
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| T |
28565763 |
tgttccatctaaaaatgggagtgcacctgcaaagaaagttgatacttctgaagaagaagattctgaagaatcttctgatgaagacaaggtaatagacatt |
28565664 |
T |
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| Q |
296 |
ttgaagtttattgcatgctgataattcgcttaagtttattgcatgatacctctaatttatagataaaacattgtgttgccaactttttgttttgtttatt |
395 |
Q |
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| T |
28565663 |
ttgaagtttattgcatgatgataattccctttagtttatttcatgatacctttaatttatagcaaaaacaatgcgttgccaactttttgttttgtttatt |
28565564 |
T |
|
| Q |
396 |
aaaactccctctataactcacttacatgtt-ttttatggttcagaaacctgcagctaaagttgttccatgtaaaaatgggagtgcgccggcaaagaaagc |
494 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||||||||| || ||||||||||| |
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| T |
28565563 |
aaaactccctctataactcacttacatgtttttttatggttcagaaacctgcagctaaagctgttccatctaaaaatgggagtgcacccgcaaagaaagc |
28565464 |
T |
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| Q |
495 |
tgatacttctgacgaagattctgatgaa |
522 |
Q |
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| T |
28565463 |
tgcttctgatgaagaagatactgatgaa |
28565436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 424 - 512
Target Start/End: Complemental strand, 28565795 - 28565707
Alignment:
| Q |
424 |
ttttttatggttcagaaacctgcagctaaagttgttccatgtaaaaatgggagtgcgccggcaaagaaagctgatacttctgacgaaga |
512 |
Q |
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| T |
28565795 |
ttttttatggttcagaaacccgtatctaaagctgttccatctaaaaatgggagtgcacctgcaaagaaagttgatacttctgaagaaga |
28565707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 424 - 501
Target Start/End: Complemental strand, 28565297 - 28565220
Alignment:
| Q |
424 |
ttttttatggttcagaaacctgcagctaaagttgttccatgtaaaaatgggagtgcgccggcaaagaaagctgatact |
501 |
Q |
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| T |
28565297 |
tttttcattgttcagaaacctgctgcaaaagctgttccttccaagaatgggagtgtacccgcaaagaaagctgatact |
28565220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 116 - 180
Target Start/End: Complemental strand, 14722633 - 14722569
Alignment:
| Q |
116 |
ggtaggctgtaaaattagtacaacttttacagaaaagttgtttctagaatgaaaaacatcgaaat |
180 |
Q |
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| T |
14722633 |
ggtaggttgtaaaattagtacatcttttacagaaaagttgtttctagaatgaaaaacatccaaat |
14722569 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 16 - 70
Target Start/End: Complemental strand, 14722703 - 14722650
Alignment:
| Q |
16 |
atgaaaagggatttagtatacttagatactttgtagctgaattgatttttccttt |
70 |
Q |
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| T |
14722703 |
atgaaaagggatttagtatacttagata-tttgtaactgaattgattttgccttt |
14722650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 430 - 498
Target Start/End: Original strand, 20041373 - 20041441
Alignment:
| Q |
430 |
atggttcagaaacctgcagctaaagttgttccatgtaaaaatgggagtgcgccggcaaagaaagctgat |
498 |
Q |
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| T |
20041373 |
atggtttagaaccctgcaacaaaagttgttccatctaaaaatggaagtgcacctgtaaagaaagctgat |
20041441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 255
Target Start/End: Original strand, 20041399 - 20041441
Alignment:
| Q |
213 |
tgttccatctaaaaaagggagtgcacctgcaaagaaagctgat |
255 |
Q |
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| T |
20041399 |
tgttccatctaaaaatggaagtgcacctgtaaagaaagctgat |
20041441 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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