View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12882_low_15 (Length: 570)
Name: NF12882_low_15
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_15 |
 | |
|
| [»] scaffold0134 (1 HSPs) |
| | |
|
| [»] scaffold0054 (2 HSPs) |
| | |
|
| [»] scaffold0613 (1 HSPs) |
| | |
|
| [»] scaffold0129 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 523; Significance: 0; HSPs: 10)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 9581586 - 9582135
Alignment:
| Q |
1 |
ccagaccagaaaaacaggcaacagcagaccagaaaacagcaccagatgagccaaaacagaaccacagaatcatcagcgacgatacaaggacaatggcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9581586 |
ccagaccagaaaaacaggcaacagcagaccagaaaacagcaccagatgagccaaaacagaaccacagaatcatcagcgacgatacaaggacaatggcctg |
9581685 |
T |
|
| Q |
101 |
ctaccgattcaagctatctctggaattcaaattgacaagacactttgtatataaggtaatatcccaatcaccacaatcattttactcctggtaaaaataa |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9581686 |
ctaccgattcaagcgatctctggaattcaaattgacaagacactttgtatataaggtaatatcccaatcaccacaatcattttactcctggtaaaaataa |
9581785 |
T |
|
| Q |
201 |
ctaattacttattcctccaattggaagaatgttttccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaatcatttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9581786 |
ctaattacttattcctccaattggaagaatgttt-ccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaatcatttga |
9581884 |
T |
|
| Q |
301 |
gtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtc |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9581885 |
gtacttaaatcaagacaaactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccaataggacgctcaatgcaagacaacggtc |
9581984 |
T |
|
| Q |
401 |
caaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9581985 |
caaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaat |
9582084 |
T |
|
| Q |
501 |
ggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaaca |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9582085 |
ggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaaca |
9582135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 523; E-Value: 0
Query Start/End: Original strand, 1 - 551
Target Start/End: Original strand, 9587281 - 9587830
Alignment:
| Q |
1 |
ccagaccagaaaaacaggcaacagcagaccagaaaacagcaccagatgagccaaaacagaaccacagaatcatcagcgacgatacaaggacaatggcctg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9587281 |
ccagaccagaaaaacaggcaacagcagaccagaaaacagcaccagatgagccaaaacagaaccacagaatcatcagcgacgatacaaggacaatggcctg |
9587380 |
T |
|
| Q |
101 |
ctaccgattcaagctatctctggaattcaaattgacaagacactttgtatataaggtaatatcccaatcaccacaatcattttactcctggtaaaaataa |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9587381 |
ctaccgattcaagcgatctctggaattcaaattgacaagacactttgtatataaggtaatatcccaatcaccacaatcattttactcctggtaaaaataa |
9587480 |
T |
|
| Q |
201 |
ctaattacttattcctccaattggaagaatgttttccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaatcatttga |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9587481 |
ctaattacttattcctccaattggaagaatgttt-ccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaatcatttga |
9587579 |
T |
|
| Q |
301 |
gtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtc |
400 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
9587580 |
gtacttaaatcaagacaaactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccaataggacgctcaatgcaagacaacggtc |
9587679 |
T |
|
| Q |
401 |
caaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaat |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9587680 |
caaccatgaagagtttggtccatgactcctttataccgtattcacccaaaattgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaat |
9587779 |
T |
|
| Q |
501 |
ggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaaca |
551 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9587780 |
ggacccatttaacaccgccaagtttatccacaaggtgtgaagattgaaaca |
9587830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 53 - 551
Target Start/End: Original strand, 9593420 - 9593928
Alignment:
| Q |
53 |
aaaacagaaccacagaatcatcagcgacgatacaaggacaatggcctgctaccgattcaagctatctctgg-aattcaaattgacaagacactttgtata |
151 |
Q |
| |
|
|||||| ||||||| || ||| ||| || ||||||||| |||| || ||||||||||||||| ||||| || ||||| |||||||||||||||||| ||| |
|
|
| T |
9593420 |
aaaacaaaaccacataagcatgagcaacaatacaaggataatgacccgctaccgattcaagcaatctcagggaattccaattgacaagacactttgcata |
9593519 |
T |
|
| Q |
152 |
taaggtaatatcccaatcaccacaatcattttactcctggtaaaaa---------taactaattacttattcctccaattggaagaatgttttccttgta |
242 |
Q |
| |
|
|||||||||| ||||||||||| |||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9593520 |
caaggtaatattccaatcaccacgatcattttgctcctggtgaaaacaaggaaaataactaattacttattcctccaattggaagaatgttttccttgta |
9593619 |
T |
|
| Q |
243 |
cattactatccgatcaatagaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatg |
342 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| ||||||||| ||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||| |
|
|
| T |
9593620 |
tattaatatccgatcaatagaattcacttttttgcaagcaagcttcacaatcgtttgagtatttaaatcaagacaaactagttctttatcttctctgatg |
9593719 |
T |
|
| Q |
343 |
acgaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtatt |
442 |
Q |
| |
|
| |||||||||||||||||| ||||||||||| |||||||||||| ||||||||||||| || ||||||| |||||||| || |||||||||||||||| |
|
|
| T |
9593720 |
aagaatatttctcctttcgtacccactccgatgggacgctcaatgaaagacaacggtccgacaatgaagaaattggtccacgattcctttataccgtatt |
9593819 |
T |
|
| Q |
443 |
caccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaaggtgtgaag |
542 |
Q |
| |
|
|||| ||||| ||||| |||||||| || ||||||| |||||||||||||||||||| |||||||||||||||| |||||||||||||||| | |||||| |
|
|
| T |
9593820 |
cacccaaaattgatatctgaaaattagttgtctctttatgatatgagatcaatgcaaaggacccatttaacaccaccaagtttatccacaatgcgtgaag |
9593919 |
T |
|
| Q |
543 |
attgaaaca |
551 |
Q |
| |
|
|| |||||| |
|
|
| T |
9593920 |
atcgaaaca |
9593928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 195 - 533
Target Start/End: Complemental strand, 9569473 - 9569135
Alignment:
| Q |
195 |
aaataactaattacttattcctccaattggaagaatgttttccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaatc |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
9569473 |
aaataactaattacttattcctccaattggaagaatattttccttgtatattactatcctatcaatagaattcacttctttgtaaacaagctccacaatc |
9569374 |
T |
|
| Q |
295 |
atttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaagaca |
394 |
Q |
| |
|
||||||||||||||||||| ||| ||||| |||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |
|
|
| T |
9569373 |
atttgagtacttaaatcaatacaaactagctctttatcttttctgatgacgaatatttctccttttgtccccactccgataggacgctcaatgcaagaca |
9569274 |
T |
|
| Q |
395 |
acggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaa |
494 |
Q |
| |
|
|||||||||| | ||||||||||||||| || ||||| || || |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
9569273 |
acggtccaacaaggaagagtttggtccacgattccttaatgccatattcacccaaaatcgatatgtgaaaattagtcgtctcttcatgatatgagatcaa |
9569174 |
T |
|
| Q |
495 |
tgcaatggacccatttaacaccgccaagtttatccacaa |
533 |
Q |
| |
|
||||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
9569173 |
cgcaatggccccgtttaacaccaccaagtttatccacaa |
9569135 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 35 - 533
Target Start/End: Original strand, 9602197 - 9602719
Alignment:
| Q |
35 |
aacagcaccagatgagccaaaa-cagaaccacagaatcatcagcgacgatacaaggacaatggcctgctaccgattcaagctatctctggaattcaaatt |
133 |
Q |
| |
|
|||||||||||||||||||||| || ||||| | | |||||||||||||||||||| ||||||| |||||||||| ||| ||||| || ||| |||| |
|
|
| T |
9602197 |
aacagcaccagatgagccaaaaacaaaaccatatatgcatcagcgacgatacaaggataatggcccgctaccgatttaagaaatctccggggttccaatt |
9602296 |
T |
|
| Q |
134 |
gacaagacactttgtatataaggtaatatcccaatcaccacaatcattttac-------tcctggt---------aaaaataactaattacttattcctc |
217 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||| |||||||||| | ||||||| ||||||||||||||||||||||||| |
|
|
| T |
9602297 |
gacaagacactttgcatacaaggtaatatcccaatcactgcaatcattttgcattttgctcctggtgaaaacaagaaaaataactaattacttattcctc |
9602396 |
T |
|
| Q |
218 |
caattggaagaatgttttccttgtacattactatccgat-------caatagaattcacttctttgtaagcaagctccacaatcatttgagtacttaaat |
310 |
Q |
| |
|
| ||||||||||||||||||||||| |||| ||| |||| |||||||||||||||||||||||| ||||||||||| | |||||||||||||| |
|
|
| T |
9602397 |
cgattggaagaatgttttccttgtatattagtattcgatcgacgatcaatagaattcacttctttgtaagaaagctccacaaccgattgagtacttaaat |
9602496 |
T |
|
| Q |
311 |
caagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtccaaccatgaa |
410 |
Q |
| |
|
||||||| |||| ||||||||||| ||||||||| ||||||||||||||| | || || |||||||||||||||||||||||||||| |||||| | || |
|
|
| T |
9602497 |
caagacaaactacttctttatcttctctgatgacaaatatttctcctttcatcccaaccccgataggacgctcaatgcaagacaacgatccaacattaaa |
9602596 |
T |
|
| Q |
411 |
gagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccattt |
510 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| ||||| ||||| |||||||| ||||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
9602597 |
gagtttggtccacgactcctttataccgtattcacccaaaattgatatttgaaaattattcgtctctttatgatatgagatcaatgaaacggacccattt |
9602696 |
T |
|
| Q |
511 |
aacaccgccaagtttatccacaa |
533 |
Q |
| |
|
|||||| |||||||||||||||| |
|
|
| T |
9602697 |
aacaccaccaagtttatccacaa |
9602719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 324 - 533
Target Start/End: Original strand, 54295006 - 54295215
Alignment:
| Q |
324 |
ttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccat |
423 |
Q |
| |
|
||||||||||| ||| | || ||||||||| || ||||| ||||||||||||||| |||||| |||||||||||||||| ||||| ||||||||||| |
|
|
| T |
54295006 |
ttctttatcttttcttacgaagaatatttcccccttcgtccccactccgataggatgctcaacataagacaacggtccaacaatgaaaagtttggtccac |
54295105 |
T |
|
| Q |
424 |
gactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagt |
523 |
Q |
| |
|
|| || | | |||| ||||||| ||||| |||||||||||||| || | |||||||||||||||||||||||||||| ||||||||| ||||||||| |
|
|
| T |
54295106 |
gattctatcacaccgaattcacccaaaattgatatgtgaaaattagtggactcttcatgatatgagatcaatgcaatgcacccatttagtaccgccaagg |
54295205 |
T |
|
| Q |
524 |
ttatccacaa |
533 |
Q |
| |
|
|||||||||| |
|
|
| T |
54295206 |
ttatccacaa |
54295215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 5 - 189
Target Start/End: Complemental strand, 9569828 - 9569646
Alignment:
| Q |
5 |
accagaaaaacaggcaacagcagaccagaaaa-cagcaccagatgagccaaaacagaaccacagaatcatcagcgacgatacaaggacaatggcctgcta |
103 |
Q |
| |
|
|||||||| |||| |||||||||||||||||| ||| | ||| |||||||||||||||||| || |||||||||||||||||||| ||||||| |||| |
|
|
| T |
9569828 |
accagaaagacag-caacagcagaccagaaaaacagacctggattagccaaaacagaaccacataagcatcagcgacgatacaaggataatggcccgcta |
9569730 |
T |
|
| Q |
104 |
ccgattcaagctatctctggaattcaaattgacaagacactttgtatataaggtaatatcccaatcaccacaatcattttactcct |
189 |
Q |
| |
|
|||||| |||| ||||| | |||| | |||||||||||||| ||| ||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
9569729 |
ccgattaaagcaatctccaggattc--ctagacaagacactttgcatacaaggtaatatcccaatcaccacaatcattttgctcct |
9569646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 407 - 533
Target Start/End: Complemental strand, 37898014 - 37897888
Alignment:
| Q |
407 |
tgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggaccc |
506 |
Q |
| |
|
|||||||||||||||| || ||||| ||||| ||| || |||| |||| ||||||| | |||||||||||||||||||||| ||||||||||||| | |
|
|
| T |
37898014 |
tgaagagtttggtccacgattccttcataccaagttcgcccaaaactgatacgtgaaaagtagtcgtctcttcatgatatgagaacaatgcaatggactc |
37897915 |
T |
|
| Q |
507 |
atttaacaccgccaagtttatccacaa |
533 |
Q |
| |
|
|| |||||||||||||||||||||||| |
|
|
| T |
37897914 |
atataacaccgccaagtttatccacaa |
37897888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 25 - 142
Target Start/End: Original strand, 9606071 - 9606190
Alignment:
| Q |
25 |
cagaccagaaaa-cagcaccagatgagccaaaa-cagaaccacagaatcatcagcgacgatacaaggacaatggcctgctaccgattcaagctatctctg |
122 |
Q |
| |
|
|||||||||||| ||||| |||||||||||||| ||||| ||| || ||||||| |||||||||||| |||||| ||||||||||||||| ||||| | |
|
|
| T |
9606071 |
cagaccagaaaagcagcaacagatgagccaaaaacagaaggacataagcatcagcaacgatacaaggataatggctcgctaccgattcaagcaatctccg |
9606170 |
T |
|
| Q |
123 |
gaattcaaattgacaagaca |
142 |
Q |
| |
|
|||| ||||||||||||| |
|
|
| T |
9606171 |
agattctaattgacaagaca |
9606190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 340 - 387
Target Start/End: Complemental strand, 9571927 - 9571880
Alignment:
| Q |
340 |
atgacgaatatttctcctttcgttcccactccgataggacgctcaatg |
387 |
Q |
| |
|
|||| |||||||||||||||||| ||||||| ||||||| |||||||| |
|
|
| T |
9571927 |
atgaagaatatttctcctttcgtccccactctgataggatgctcaatg |
9571880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 150; Significance: 5e-79; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 150; E-Value: 5e-79
Query Start/End: Original strand, 272 - 533
Target Start/End: Complemental strand, 29013036 - 29012775
Alignment:
| Q |
272 |
ctttgtaagcaagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactcc |
371 |
Q |
| |
|
|||| ||| ||| |||| |||||||||| ||||| |||||||| || |||||||||| ||||| |||||||| |||||||||||||||||| |||||||| |
|
|
| T |
29013036 |
ctttataaccaacctcctcaatcatttgggtactcaaatcaagccaaactagttcttcatcttttctgatgaagaatatttctcctttcgtccccactcc |
29012937 |
T |
|
| Q |
372 |
gataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtc |
471 |
Q |
| |
|
||||||||||| || |||||||||||||||||| |||||||||||||||||||| ||||| | |||| | || || ||||| |||||||||||||| ||| |
|
|
| T |
29012936 |
gataggacgcttaacgcaagacaacggtccaacaatgaagagtttggtccatgattccttcacaccgaaatcccccaaaattgatatgtgaaaattagtc |
29012837 |
T |
|
| Q |
472 |
gtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaa |
533 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
29012836 |
gtctctttatgatatgagaccaatgcaatggacccatttaataccgccaagtttaaccacaa |
29012775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 124; E-Value: 2e-63
Query Start/End: Original strand, 199 - 530
Target Start/End: Complemental strand, 29131585 - 29131254
Alignment:
| Q |
199 |
aactaattacttattcctccaattggaagaatgttttccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaatcattt |
298 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||| |||||||| |||| ||||||| | || | |||| |||||||| ||||| || |||| ||| |
|
|
| T |
29131585 |
aactacttacttgttcctccaattggaagaatgttatccttgtatattattatccgactagtatgacccactcctttgtaaccaagccccgcaattcttt |
29131486 |
T |
|
| Q |
299 |
gagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacgg |
398 |
Q |
| |
|
| |||||||||||||| || |||||||||| ||||| ||| | || ||||||||||||||| || |||||||| ||||||||||||| || |||||| || |
|
|
| T |
29131485 |
gcgtacttaaatcaagccaaactagttcttcatcttttcttaggaagaatatttctccttttgtccccactccaataggacgctcaacgccagacaatgg |
29131386 |
T |
|
| Q |
399 |
tccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgca |
498 |
Q |
| |
|
|||||| ||||||| |||||||| || || ||||| || ||||||| ||||| |||||||||||| | || || ||||||||||||| ||||||||| |
|
|
| T |
29131385 |
tccaacaatgaagatcttggtccacgattcttttatgccaaattcacccaaaattgatatgtgaaaagtagttgtgccttcatgatatgacatcaatgca |
29131286 |
T |
|
| Q |
499 |
atggacccatttaacaccgccaagtttatcca |
530 |
Q |
| |
|
|||||| |||| ||||| |||||||||||||| |
|
|
| T |
29131285 |
atggacacattcaacactgccaagtttatcca |
29131254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 276 - 512
Target Start/End: Original strand, 32740592 - 32740828
Alignment:
| Q |
276 |
gtaagcaagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgata |
375 |
Q |
| |
|
|||| |||||||| ||||| |||| |||| ||||||||| || |||||||||| ||||| ||| | || |||||||||||||||||| |||||||| ||| |
|
|
| T |
32740592 |
gtaaccaagctccgcaatcctttgtgtacataaatcaagccaaactagttcttcatcttttcttaggaagaatatttctcctttcgtccccactccaata |
32740691 |
T |
|
| Q |
376 |
ggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtct |
475 |
Q |
| |
|
||||| | || | |||||| |||||||| ||||||||||||||||| || |||||||| ||| ||||||| ||||| |||| | ||||| | || || | |
|
|
| T |
32740692 |
ggacgttgaacaccagacaatggtccaacaatgaagagtttggtccacgattcctttatgccgaattcacccaaaattgatacgagaaaagtagttgtgt |
32740791 |
T |
|
| Q |
476 |
cttcatgatatgagatcaatgcaatggacccatttaa |
512 |
Q |
| |
|
||||||||| ||||||||| |||||| ||||| |||| |
|
|
| T |
32740792 |
cttcatgatgtgagatcaaggcaatgaacccacttaa |
32740828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 281 - 531
Target Start/End: Original strand, 29152012 - 29152262
Alignment:
| Q |
281 |
caagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacg |
380 |
Q |
| |
|
|||||||| |||||||||||||||| | ||||| || ||| ||||||||||| ||| || | ||||||||| || || | ||||||||||||||||| |
|
|
| T |
29152012 |
caagctcctcaatcatttgagtactcagatcaaaccaagctacttctttatcttttcttataaagaatatttccccatttttccccactccgataggacg |
29152111 |
T |
|
| Q |
381 |
ctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttca |
480 |
Q |
| |
|
||||| | ||| ||||||||||||||||||||||||| |||| || || | | |||| || ||| ||||| |||| ||||| | |||||||||||| |
|
|
| T |
29152112 |
ctcaacgtaaggcaacggtccaaccatgaagagtttgatccacgattctctgaaaccgagttgacccaaaattgatacacgaaaagtagtcgtctcttca |
29152211 |
T |
|
| Q |
481 |
tgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccac |
531 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
29152212 |
ttatatgagatcaatgctatggacccatttaacacacccaagtttatccac |
29152262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 281 - 531
Target Start/End: Original strand, 34278330 - 34278580
Alignment:
| Q |
281 |
caagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacg |
380 |
Q |
| |
|
|||||||| ||||||| || |||| ||||||| || ||| ||||||||||| | | |||| |||||||| || || || ||||||||||||||||| |
|
|
| T |
34278330 |
caagctcctcaatcatatggatactcaaatcaaaccaagctacttctttatcttttattatgaagaatattttcccctttgtccccactccgataggacg |
34278429 |
T |
|
| Q |
381 |
ctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttca |
480 |
Q |
| |
|
||||| | ||| ||||||||||||||||||||||||| |||| || || || | |||| || ||| |||||||||| ||||| | ||| |||||| | |
|
|
| T |
34278430 |
ctcaacgtaaggcaacggtccaaccatgaagagtttgatccaagattctttgaaaccgagttgacccaaaatcgatacacgaaaagtagtcatctcttta |
34278529 |
T |
|
| Q |
481 |
tgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccac |
531 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
34278530 |
tgatatgtgatcaatgctatggacccatttaacaccaccaagtttatccac |
34278580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 281 - 530
Target Start/End: Complemental strand, 29124343 - 29124094
Alignment:
| Q |
281 |
caagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacg |
380 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||| || ||||||||||||||| ||| |||| ||||||||| || ||| | |||||||| |||||||| |
|
|
| T |
29124343 |
caagctcctcaatcatttgggtactcaaatcaaaccaagctagttctttatcttttctaatgaagaatatttcccccttcatacccactccaataggacg |
29124244 |
T |
|
| Q |
381 |
ctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttca |
480 |
Q |
| |
|
|||| |||| ||| ||||| | ||||||| ||||||||||| ||||| |||||| ||||| | ||| ||||| |||||| | ||| ||| |||| |
|
|
| T |
29124243 |
atcaacacaaggcaatggtcccatagtgaagagcttggtccatgattccttcataccgatctcacccagaattgatatctgaaaagtagtcttcttttca |
29124144 |
T |
|
| Q |
481 |
tgatatgagatcaatgcaatggacccatttaacaccgccaagtttatcca |
530 |
Q |
| |
|
|||||||||| ||||||||||| |||||||||||| ||||||||| |||| |
|
|
| T |
29124143 |
tgatatgagaacaatgcaatggtcccatttaacactgccaagtttctcca |
29124094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 281 - 530
Target Start/End: Original strand, 32744743 - 32744992
Alignment:
| Q |
281 |
caagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacg |
380 |
Q |
| |
|
|||||||| |||||||||| ||||| ||||||| || | ||||||| ||| | ||| |||| ||||||||| || || || |||||||| ||||| || |
|
|
| T |
32744743 |
caagctcctcaatcatttgggtactcaaatcaaaccaagccagttcttcatcgtttcttatgaagaatatttccccctttgtacccactccaataggccg |
32744842 |
T |
|
| Q |
381 |
ctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttca |
480 |
Q |
| |
|
|||| ||||| ||| ||||||| ||||||| ||||||||||| || || ||||| ||||| | ||| |||||||||||| | ||||||| |||| |
|
|
| T |
32744843 |
atcaacgcaaggcaatggtccaatagtgaagagattggtccatgattctttcataccaatctcacccataattgatatgtgaaaagtagtcgtcttttca |
32744942 |
T |
|
| Q |
481 |
tgatatgagatcaatgcaatggacccatttaacaccgccaagtttatcca |
530 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32744943 |
taatatgagatcaatgcaatggacccatttaacaccgccaagtttctcca |
32744992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 281 - 530
Target Start/End: Original strand, 32960616 - 32960865
Alignment:
| Q |
281 |
caagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacg |
380 |
Q |
| |
|
|||||| |||||||||||| |||| ||||||| | |||| ||||| ||||| ||| |||| ||||||||| || ||| | |||||||| |||||||| |
|
|
| T |
32960616 |
caagcttcacaatcatttgggtacccaaatcaaacaaaactaattcttcatcttttcttatgaagaatatttcccccttcttccccactcccataggacg |
32960715 |
T |
|
| Q |
381 |
ctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttca |
480 |
Q |
| |
|
||||| |||| ||| |||| ||| || ||||||||| |||| || ||||| |||||| |||| | ||||| |||| |||||| | |||||||||||| |
|
|
| T |
32960716 |
ctcaacacaaggcaatggtctaacaataaagagtttgatccaagattccttcataccgatttcatccaaaattgatacatgaaaagtagtcgtctcttca |
32960815 |
T |
|
| Q |
481 |
tgatatgagatcaatgcaatggacccatttaacaccgccaagtttatcca |
530 |
Q |
| |
|
| ||||| |||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
32960816 |
atgtgtgagaacaatgcaatggacccatttagcaccgccaagtttatcca |
32960865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 290 - 531
Target Start/End: Complemental strand, 34282104 - 34281863
Alignment:
| Q |
290 |
caatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgca |
389 |
Q |
| |
|
|||||||||| ||||| ||||||| || | | ||||||||||| ||| |||| ||||||||| || || || |||||||||||||||||||||| | | |
|
|
| T |
34282104 |
caatcatttgggtactcaaatcaaaccaagccacttctttatcttttcttatgaagaatatttccccctttgtccccactccgataggacgctcaacgta |
34282005 |
T |
|
| Q |
390 |
agacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgag |
489 |
Q |
| |
|
|| ||||||||||||||| ||||||||| |||| || || || | |||| || ||| ||||| |||| ||||| | | ||||||| | |||||||| |
|
|
| T |
34282004 |
aggcaacggtccaaccataaagagtttgatccacgattctttgaaaccgagttgacccaaaattgatacacgaaaagtacttgtctctttacgatatgag |
34281905 |
T |
|
| Q |
490 |
atcaatgcaatggacccatttaacaccgccaagtttatccac |
531 |
Q |
| |
|
|||||||| ||| |||||||||||||| |||||||| ||||| |
|
|
| T |
34281904 |
atcaatgctatgtacccatttaacaccaccaagtttttccac |
34281863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 345 - 533
Target Start/End: Complemental strand, 29145427 - 29145239
Alignment:
| Q |
345 |
gaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattca |
444 |
Q |
| |
|
||||||||| ||||| | || |||||||||||| ||| ||||||||| | ||||||| || ||||||||||||||||| ||||| ||||| || || |
|
|
| T |
29145427 |
gaatatttccccttttatcccaactccgataggatgcttaatgcaagatagtggtccaagaataaagagtttggtccatgattccttcatacctaatcca |
29145328 |
T |
|
| Q |
445 |
ccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccacaa |
533 |
Q |
| |
|
|| ||||| |||||||||||||| || || | ||||||||||||||||||||||||| | |||||| ||| |||| |||||||||||| |
|
|
| T |
29145327 |
cccaaaattgatatgtgaaaattagtagtttgttcatgatatgagatcaatgcaatgaaatcatttatcactgccaggtttatccacaa |
29145239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 372 - 531
Target Start/End: Complemental strand, 29300182 - 29300023
Alignment:
| Q |
372 |
gataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtc |
471 |
Q |
| |
|
||||||||||| | ||||| |||||||||||| ||||||| |||||||| || |||||||||| | ||||| ||||| |||||||||||| | ||| |
|
|
| T |
29300182 |
gataggacgctggacgcaagccaacggtccaacattgaagagattggtccacgattcctttatactgagctcacccaaaattgatatgtgaaaagtagtc |
29300083 |
T |
|
| Q |
472 |
gtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccac |
531 |
Q |
| |
|
|||| || ||| |||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29300082 |
gtctttttttgaaatgagatcaaggcaatggacccatttaacacagccaagtttatccac |
29300023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 281 - 531
Target Start/End: Complemental strand, 29137477 - 29137227
Alignment:
| Q |
281 |
caagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacg |
380 |
Q |
| |
|
|||||||| | |||||||| ||||||||||||| || ||||||||||||||| ||| | | | ||||||| || || || |||||||| | |||||| |
|
|
| T |
29137477 |
caagctcctcgatcatttgggtacttaaatcaaaccaagctagttctttatcttttcttgtaaaggatatttccccctttgtccccactccaaaaggacg |
29137378 |
T |
|
| Q |
381 |
ctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttca |
480 |
Q |
| |
|
||||| |||| ||| |||| ||| ||||||| ||||||||| ||||| ||||| |||||| ||||| |||| |||||| | | | ||| |||| |
|
|
| T |
29137377 |
ctcaacacaaggcaatggtctaactgtgaagagcctggtccatgtttccttcataccaacttcacccaaaatagatacatgaaaagtagccatcttttca |
29137278 |
T |
|
| Q |
481 |
tgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccac |
531 |
Q |
| |
|
|||||||| ||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
29137277 |
tgatatgatatcaatgcaatggacaaatttaacaccaccaagtttatccac |
29137227 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 277 - 531
Target Start/End: Original strand, 34258133 - 34258387
Alignment:
| Q |
277 |
taagcaagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgatag |
376 |
Q |
| |
|
|||||||||||| ||||| |||| || || |||| || || |||||| |||||||| ||| |||| ||||||||| || || || |||| ||| || | |
|
|
| T |
34258133 |
taagcaagctcctcaatcgtttgggtgctcaaattaaaccaagctagttttttatcttttcttatgaagaatatttccccctttgtccccattccaatgg |
34258232 |
T |
|
| Q |
377 |
gacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctc |
476 |
Q |
| |
|
| || || |||||||| || ||||| | ||||||||| |||||||| || || | |||| ||| ||||| |||||||||||| |||| || | |
|
|
| T |
34258233 |
ggtacttaacgcaagacatcgatccaataacgaagagttttgtccatgattctttcacgccgtgttcgttcaaaattgatatgtgaaaagttgtagtttt |
34258332 |
T |
|
| Q |
477 |
ttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccac |
531 |
Q |
| |
|
||||| |||||||| || |||||| ||||||||||||||||||||||||||||| |
|
|
| T |
34258333 |
ttcattatatgagagtaaggcaatgaacccatttaacaccgccaagtttatccac |
34258387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 526
Target Start/End: Original strand, 25319365 - 25319437
Alignment:
| Q |
454 |
gatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagttta |
526 |
Q |
| |
|
|||| ||||||| | ||| ||| |||||||||||||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
25319365 |
gatacgtgaaaagtagtcatcttttcatgatatgagatcaaagcaacatacccatttaacaccaccaagttta |
25319437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 454 - 526
Target Start/End: Original strand, 26149058 - 26149130
Alignment:
| Q |
454 |
gatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagttta |
526 |
Q |
| |
|
|||| ||||||| | ||| ||| |||||||||||||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
26149058 |
gatacgtgaaaagtagtcatcttttcatgatatgagatcaaagcaacatacccatttaacaccaccaagttta |
26149130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 193 - 255
Target Start/End: Original strand, 32740526 - 32740588
Alignment:
| Q |
193 |
aaaaataactaattacttattcctccaattggaagaatgttttccttgtacattactatccga |
255 |
Q |
| |
|
||||| |||||||||||| ||||||||||| ||||||| || |||| ||| |||| ||||||| |
|
|
| T |
32740526 |
aaaaaaaactaattacttgttcctccaatttgaagaatattatcctcgtatattattatccga |
32740588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 111; Significance: 9e-56; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 111; E-Value: 9e-56
Query Start/End: Original strand, 193 - 531
Target Start/End: Complemental strand, 42446620 - 42446283
Alignment:
| Q |
193 |
aaaaataactaattacttattcctccaattggaagaatgttttccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaa |
292 |
Q |
| |
|
||||| || |||||| |||||||||||||||||||||||||||||||||| |||| || |||| || ||| | | || |||| ||| ||||| || ||| |
|
|
| T |
42446620 |
aaaaacaattaattaattattcctccaattggaagaatgttttccttgtatattattacccgagcagtaggaccccctcctttataaccaagcccctcaa |
42446521 |
T |
|
| Q |
293 |
tcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaaga |
392 |
Q |
| |
|
|||| | |||||||||||||| || |||||||| ||||| ||| |||| |||||||||||||||| | |||||| ||||||||||||||| ||| |
|
|
| T |
42446520 |
tcatcttggtacttaaatcaagccaagctagttctccatcttttctaatgaagaatatttctcctttcatccccacttcgataggacgctcaacacaatg |
42446421 |
T |
|
| Q |
393 |
caacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatc |
492 |
Q |
| |
|
|||||||||||| |||| ||||||||||||||| ||||| ||| | |||||| ||||| |||||||||||| | ||||| ||||||| |||||||| |
|
|
| T |
42446420 |
caacggtccaacaatgacgagtttggtccatgattccttgatagcaagttcacccaaaattgatatgtgaaaa-aagccgtcttttcatgaaatgagatc |
42446322 |
T |
|
| Q |
493 |
aatgcaatggacccatttaacaccgccaagtttatccac |
531 |
Q |
| |
|
|| ||||||||| | |||||||| |||||||||||||| |
|
|
| T |
42446321 |
aaggcaatggactcgtttaacacaaccaagtttatccac |
42446283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 345 - 531
Target Start/End: Complemental strand, 7793951 - 7793765
Alignment:
| Q |
345 |
gaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattca |
444 |
Q |
| |
|
||||||||| |||||||| |||||||| ||||||||||| ||| |||| || ||||||| ||||||||||| ||||| || |||| | |||| ||| | |
|
|
| T |
7793951 |
gaatatttcccctttcgtccccactccaataggacgctcgatgaaagaaaatggtccaataatgaagagtttagtccacgatcccttcacaccgaattta |
7793852 |
T |
|
| Q |
445 |
ccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatccac |
531 |
Q |
| |
|
| ||||| | ||| || ||||| | ||| |||||||| ||| |||||| | |||| | |||||||||||| |||| ||||||||| |
|
|
| T |
7793851 |
tccaaaatggctatatggaaattattagtcacttcatgaaatgtgatcaaggaaatgtagccatttaacaccaccaaatttatccac |
7793765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0134 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0134
Description:
Target: scaffold0134; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 210 - 530
Target Start/End: Original strand, 16037 - 16357
Alignment:
| Q |
210 |
tattcctccaattggaagaatgttttccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaatcatttgagtacttaaa |
309 |
Q |
| |
|
|||||||||| || |||||||||| ||||||| |||| ||||||| || | ||| | || |||| ||| |||| ||| |||||||||||||| | | | |
|
|
| T |
16037 |
tattcctccatctgtaagaatgtttaccttgtatattattatccgagcacaacaatcccctgctttataaccaagttcctcaatcatttgagtattaaga |
16136 |
T |
|
| Q |
310 |
tcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtccaaccatga |
409 |
Q |
| |
|
|||| || ||| ||||| ||| | ||| || ||||| ||| ||||| || |||||||||||||||| | || ||||||||| ||||||| ||| |
|
|
| T |
16137 |
tcaaaccaagctaattcttcatcctttctttggaagaataattccccttttgtccccactccgataggacacctaacgcaagacaatggtccaatagtga |
16236 |
T |
|
| Q |
410 |
agagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatt |
509 |
Q |
| |
|
|||| ||| ||||||| ||||| |||| |||||| ||||| |||||||||||| | ||| | ||||||||| ||||||||||||||| || |||| |
|
|
| T |
16237 |
agagattgatccatgattccttcttaccaatttcacccaaaattgatatgtgaaaagtagtccttggttcatgataagagatcaatgcaatgcactcatt |
16336 |
T |
|
| Q |
510 |
taacaccgccaagtttatcca |
530 |
Q |
| |
|
|||| |||||||||||||| |
|
|
| T |
16337 |
taaccgtgccaagtttatcca |
16357 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0054
Description:
Target: scaffold0054; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 193 - 465
Target Start/End: Original strand, 33262 - 33534
Alignment:
| Q |
193 |
aaaaataactaattacttattcctccaattggaagaatgttttccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaa |
292 |
Q |
| |
|
|||||||| ||||||||||||||| |||| | |||||||||||||||||| | | ||||||| | || | | | |||| ||| ||||||| ||| |
|
|
| T |
33262 |
aaaaataattaattacttattccttcaatggcaagaatgttttccttgtatagtgatatccgagtataaggaccccttgctttataaccaagctcttcaa |
33361 |
T |
|
| Q |
293 |
tcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaaga |
392 |
Q |
| |
|
||| ||| ||||||| ||||| || ||| ||| ||||||| || || ||| ||||| |||||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
33362 |
tcacttgggtacttagatcaaaccaagctaattcattatctttcctttggaagaaaatttcccctttcgtccccactctgataggacgctcaacgcaaga |
33461 |
T |
|
| Q |
393 |
caacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaa |
465 |
Q |
| |
|
|||||||||||| |||||||||||||||| || ||||| || ||| |||||| ||||| | ||||| |||| |
|
|
| T |
33462 |
caacggtccaacagtgaagagtttggtccacgattccttaatgccgagttcacccaaaattgctatgtcaaaa |
33534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0054; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 193 - 465
Target Start/End: Original strand, 39613 - 39885
Alignment:
| Q |
193 |
aaaaataactaattacttattcctccaattggaagaatgttttccttgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaa |
292 |
Q |
| |
|
|||||||| ||||||||||||||| ||||| |||||||||||||||||| | | ||||||| | || | | | |||| ||| ||||||| ||| |
|
|
| T |
39613 |
aaaaataattaattacttattccttcaattacaagaatgttttccttgtatagtgatatccgagtataaggaccccttgctttataaccaagctcttcaa |
39712 |
T |
|
| Q |
293 |
tcatttgagtacttaaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaaga |
392 |
Q |
| |
|
||| ||| ||||||| ||||| || ||| ||| ||||||| ||| || ||| ||||| ||||| || |||||||||||||||||||||| |||||| |
|
|
| T |
39713 |
tcacttgggtacttagatcaaaccaagctaattcattatcttttctttggaagaaaatttccccttttgtccccactccgataggacgctcaacgcaaga |
39812 |
T |
|
| Q |
393 |
caacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaa |
465 |
Q |
| |
|
|||||||||||| | ||||||||| |||| || ||||| || ||| |||||| ||||| | |||||||||| |
|
|
| T |
39813 |
caacggtccaacagtaaagagtttgatccacgattccttaatgccgagttcacccaaaattgctatgtgaaaa |
39885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0613 (Bit Score: 46; Significance: 6e-17; HSPs: 1)
Name: scaffold0613
Description:
Target: scaffold0613; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 142 - 530
Target Start/End: Complemental strand, 534 - 143
Alignment:
| Q |
142 |
actttgtatataaggtaatatcccaatcaccacaatcattttactcctggtaaaaata---actaattacttattcctccaattggaagaatgttttcct |
238 |
Q |
| |
|
|||||| ||| ||||||||||| |||| |||| |||||| | ||| ||| |||||| | ||||||| |||||||||| || |||||||||||||| |
|
|
| T |
534 |
actttgcatacaaggtaatatctcaataaccataatcatatacctcttggagaaaatagaaattaattacctattcctccattttcaagaatgttttcct |
435 |
T |
|
| Q |
239 |
tgtacattactatccgatcaatagaattcacttctttgtaagcaagctccacaatcatttgagtacttaaatcaagacacactagttctttatcttgtct |
338 |
Q |
| |
|
|||| |||| ||||||| | | ||| | || |||| ||| |||| ||| |||||||||||||| | ||||| || ||| ||||| ||| | ||| |
|
|
| T |
434 |
tgtatattattatccgagtacgacaatcccctgctttataaccaagttcctcaatcatttgagtatgaagatcaaaccaagctaattcttcatcctttct |
335 |
T |
|
| Q |
339 |
gatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccg |
438 |
Q |
| |
|
|| ||||| ||| ||||| | ||||||||||||||| ||||| ||||||||| ||||||| ||||| | ||||||||||| || || | || |
|
|
| T |
334 |
ttggaagaataattccccttttttccccactccgataggaaactcaacgcaagacaatggtccaatagtgaagtgattggtccatgattcattctttcca |
235 |
T |
|
| Q |
439 |
tattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacaccgccaagtttatcca |
530 |
Q |
| |
|
|||||| ||||| |||||||||||| | ||| | | ||||||| ||||||||||||||| || |||||||| |||||||||||||| |
|
|
| T |
234 |
atttcacccaaaattgatatgtgaaaagtagtccttggtacatgataagagatcaatgcaatgcactcatttaaccatgccaagtttatcca |
143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 209 - 523
Target Start/End: Complemental strand, 32643216 - 32642902
Alignment:
| Q |
209 |
ttattcctccaattggaagaatgttttccttgtacattactatccgat---caatagaattcacttctttgtaagcaagctccacaatcatttgagtact |
305 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||| | ||||||||||| || | || || |||| | |||| ||| |||||||||| ||||| |
|
|
| T |
32643216 |
ttattccaccaattggaagaaggttttccttgtaaactactatccgataaccacgactatctcctcctttaacatcaaggtcctcaatcatttgggtact |
32643117 |
T |
|
| Q |
306 |
taaatcaagacacactagttctttatcttgtctgatgacgaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtccaacc |
405 |
Q |
| |
|
|||||||| || |||||| |||| ||| | | ||| |||||||| || | |||||||||| | ||||||||| | || |||| |||||||| |
|
|
| T |
32643116 |
taaatcaaaccaagctagttttttaactttttttttgaagaatattttgcc---ctttcccactccaaaaggacgctcgacacatgacagaggtccaaca |
32643020 |
T |
|
| Q |
406 |
atgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacc |
505 |
Q |
| |
|
|||||||||||| ||||||| ||||| | | |||||| ||||| ||||||| |||| | | | | | ||| ||||||| |||||| |||||||| | |
|
|
| T |
32643019 |
atgaagagtttgatccatgattccttcacagttaattcactcaaaattgatatgttaaaagtagccatttgttcttgatatgtgatcaacgcaatggatc |
32642920 |
T |
|
| Q |
506 |
catttaacaccgccaagt |
523 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
32642919 |
catttaacaccgccaagt |
32642902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 397 - 464
Target Start/End: Original strand, 39724568 - 39724635
Alignment:
| Q |
397 |
ggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaa |
464 |
Q |
| |
|
|||||||| ||||||||||| |||||||| || ||||||||| ||| || ||||| ||||||||||| |
|
|
| T |
39724568 |
ggtccaacaatgaagagtttagtccatgattcttttataccgagttcccccaaaattgatatgtgaaa |
39724635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 516
Target Start/End: Complemental strand, 40549336 - 40549229
Alignment:
| Q |
409 |
aagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccat |
508 |
Q |
| |
|
||||||||| ||||||| ||||| | |||| |||||| ||||| |||||||||| | || |||||| |||||| | |||||||| |||| | | |||| |
|
|
| T |
40549336 |
aagagtttgatccatgattccttcacaccgacttcacccaaaattgatatgtgaatagttttcgtcttttcatgtaaagagatcaaagcaacgaagccat |
40549237 |
T |
|
| Q |
509 |
ttaacacc |
516 |
Q |
| |
|
|||||||| |
|
|
| T |
40549236 |
ttaacacc |
40549229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 516
Target Start/End: Original strand, 42564916 - 42565087
Alignment:
| Q |
345 |
gaatatttctcctttcgttcccactccgataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattca |
444 |
Q |
| |
|
|||||||||||| ||| |||||||||| |||||| | || ||||| || |||||||| ||||| |||||| ||||||| ||||| | ||| |||| |
|
|
| T |
42564916 |
gaatatttctcccttctttcccactccaataggaatatgaacgcaaggcagtggtccaacaatgaaaagtttgatccatgattccttgacacctagttca |
42565015 |
T |
|
| Q |
445 |
ccaaaaatcgatatgtgaaaatttgtcgtctcttcatgatatgagatcaatgcaatggacccatttaacacc |
516 |
Q |
| |
|
|| |||| ||||||| |||| | || ||| || ||||||| |||||| ||||| || |||||||||||| |
|
|
| T |
42565016 |
cccaaaactgatatgttaaaagtagttatcttctcgtgatatgtgatcaaagcaatcgatccatttaacacc |
42565087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 209 - 251
Target Start/End: Complemental strand, 43323054 - 43323012
Alignment:
| Q |
209 |
ttattcctccaattggaagaatgttttccttgtacattactat |
251 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| ||| |||| |
|
|
| T |
43323054 |
ttattcctccaattggaagcatgttttccttgtaaattcctat |
43323012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0129 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0129
Description:
Target: scaffold0129; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 499
Target Start/End: Original strand, 17125 - 17254
Alignment:
| Q |
370 |
ccgataggacgctcaatgcaagacaacggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaatttg |
469 |
Q |
| |
|
||||||||| |||||||||||| || ||||||| | ||||||||| ||||| |||||||| | |||| |||||| | ||| || ||||||||| | | |
|
|
| T |
17125 |
ccgataggatgctcaatgcaaggtaaaggtccaataacgaagagtttagtccaagactccttcacaccgagttcacccagaatagaaatgtgaaaagtag |
17224 |
T |
|
| Q |
470 |
tcgtctcttcatgatatgagatcaatgcaa |
499 |
Q |
| |
|
|| | ||| ||| | |||||||||||||| |
|
|
| T |
17225 |
tcatttctacatagtttgagatcaatgcaa |
17254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 397 - 465
Target Start/End: Complemental strand, 368874 - 368806
Alignment:
| Q |
397 |
ggtccaaccatgaagagtttggtccatgactcctttataccgtattcaccaaaaatcgatatgtgaaaa |
465 |
Q |
| |
|
|||||||| |||||||||||| ||||||| ||||| | ||| |||||||| ||| |||||||||||| |
|
|
| T |
368874 |
ggtccaacaatgaagagtttgatccatgattccttcacaccaatttcaccaagaattgatatgtgaaaa |
368806 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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