View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_19 (Length: 495)
Name: NF12882_low_19
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 437; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 18 - 491
Target Start/End: Complemental strand, 42505209 - 42504732
Alignment:
| Q |
18 |
cccttctattgtataaataggttataaatatgtcataagcttaccacaaagagatatagtattcagtgaaaatgaatccgaaaaaacttaattatgcaat |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42505209 |
cccttctattgtataaataggttataaatatgtcataagcttaccacaaagagatatagtattcagtgaaaatgaatccgaaaaaacttaattatgcaat |
42505110 |
T |
|
| Q |
118 |
tatagttttggtcatatattttttgaatggaagtgctcattctcagctggaggttgggttttatacttactcatgtggcatggctgagttcattgtaaaa |
217 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
42505109 |
tatagttttggtcatatattttttgaatggaaatgctcattctcagctggaggttgggttttatacttattcatgtggcatggctgagttcattgtaaaa |
42505010 |
T |
|
| Q |
218 |
gatgaggtccgaaaaagtttcaataagaatcctggaattgctgctggacttgtaagaatgcattttcatgattgctttatcagagtaagttataattaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42505009 |
gatgaggtccgaaaaagtttcaataagaatcctggaattgctgctggacttgtaagaatgcattttcatgattgctttatcagagtaagttataattaaa |
42504910 |
T |
|
| Q |
318 |
agccatttgtaacgtaatgttgcaccttgcacacaatgcttagtagtt----gttcattaagatatacattttggaaatcaccagcacaattaaaagcca |
413 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
42504909 |
agccatttgtaacgtaatgttgcaccttgcacacaatgcttagtagttgttcgttcattaagatatacattttggaaatcaccaacgcaattaaaagcca |
42504810 |
T |
|
| Q |
414 |
ttttgtgacgccattaacttaaccgcattgttaattgtaggggtgtgacgcatcggtacttctcgattcttctctctc |
491 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
42504809 |
ttttgtgacgccattaacttaaccgtattgttaattgtaggggtgtgacgcatcggtacttctcgattctactctctc |
42504732 |
T |
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