View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_22 (Length: 482)
Name: NF12882_low_22
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 19 - 467
Target Start/End: Complemental strand, 47369067 - 47368607
Alignment:
| Q |
19 |
atttggagttatgtggtctccaactcaatgtcaccaagacactaaagttgcttatctgttgtaaattacgttattaatctttatgtcacatacatcaaat |
118 |
Q |
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| T |
47369067 |
atttggagttatgtggtctccaactcaatgtcaccaagacactgaagttgcttatctgttgtaaattacgttattaatctttatgtcacatacatcaaat |
47368968 |
T |
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| Q |
119 |
cacatcatagtgtcgcttttttaagttagtttctaaaatatctacat------------aacgtgatttgattggatgcatgtatacaataagatttcaa |
206 |
Q |
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| T |
47368967 |
cacatcatagtgtcgcttttttaagttagtttctaaaatatctacatttatatctacataacgtgatttgattggatgcatgtatacaataagattagaa |
47368868 |
T |
|
| Q |
207 |
tgattgtgtatacaaattaaatctataaactatttagaggatacacccaactatttggaaacatggaggaaaatttataagcagaaaaggaatgcctgta |
306 |
Q |
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| T |
47368867 |
tgattgtgtatacaaattaaatctataaactatttagaggatacacccaactatttggaaacatggaggaaaatttataagcagaaaaggaatgcctgta |
47368768 |
T |
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| Q |
307 |
aagtataaaccaaaaaagttaagaaattaacacnnnnnnnctctgtaaatgaggttccataataccatttcttgatactgtaaacaccgaaaaatgatgt |
406 |
Q |
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| T |
47368767 |
aagtataaaccaaaaaagttaagaaattaacactttttttctctgtaaatgaggttccataataccatttcttgatactgtaaacaccgaaaaatgatgt |
47368668 |
T |
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| Q |
407 |
atattgatgcaatactacttttattattttatagacacactcacaactacattattctctg |
467 |
Q |
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| T |
47368667 |
atattgatgcaatactacttttattattttatagacacactcacaactacactattctctg |
47368607 |
T |
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Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 8132208 - 8132261
Alignment:
| Q |
112 |
atcaaatcacatcatagtgtcgcttttttaagttagtttctaaaatatctacata |
166 |
Q |
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| T |
8132208 |
atcaaatcacatcatagtg-cacttttataagttagtttctaaaatatctccata |
8132261 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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