View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_27 (Length: 428)
Name: NF12882_low_27
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 17 - 409
Target Start/End: Complemental strand, 38696245 - 38695853
Alignment:
| Q |
17 |
gagatgaatttgtggcaaggtttcaacgtccgtcctacttcagtttgatcgcctctctcctcctctatttccattatttttatttcactacaattatcac |
116 |
Q |
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| T |
38696245 |
gagatgaatttgtggcaaggtttcaacgtccgtcctacttcagtttgatcgcctctctcctcctctatttccattatttttatttcactacaattatcac |
38696146 |
T |
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| Q |
117 |
tatgaagaattatttttggttatatgcagacatcaattgaaatttagatttaggcatagagttgtgtgtgtcaggaagatgaacaggggaatgaggaaaa |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38696145 |
tatgaagaattatttttggttatatgcagacatcaattgaaatttagatttaggcatagagttgtgtgtgtcaggaagatgaacaggggaatgaggaaaa |
38696046 |
T |
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| Q |
217 |
agatggagnnnnnnnccagtgtgctgggtttaggatattttactgaaaccttatcattcaatggtaaggaagatttatgttttgtgaacaacctatataa |
316 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38696045 |
agatggagaaaaaaaccagtgtgctgggtttaggatattttactgaaaccttatcattcaatggtaaggaagatttatgttttgtgaacaacctatataa |
38695946 |
T |
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| Q |
317 |
cttatacattcggacaattgccaagattcgaaactaatgcaagtaaaaatatgagctaaattaatcaccactccactaaaatcaactgtaaaa |
409 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
38695945 |
cttatacattcggacaattgccaagattcgaaactaatgcaagtaaaaatataagctaaattaatcaccactccactaaaatcaactgtaaaa |
38695853 |
T |
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