View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12882_low_3 (Length: 918)

Name: NF12882_low_3
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12882_low_3
NF12882_low_3
[»] chr4 (12 HSPs)
chr4 (457-907)||(47982497-47982948)
chr4 (18-144)||(47981540-47981666)
chr4 (223-326)||(3887750-3887853)
chr4 (232-326)||(32414643-32414737)
chr4 (232-326)||(32416562-32416655)
chr4 (215-287)||(47981736-47981808)
chr4 (230-287)||(12582779-12582836)
chr4 (339-397)||(47992009-47992067)
chr4 (265-314)||(5577226-5577275)
chr4 (291-326)||(12582828-12582863)
chr4 (291-326)||(47981800-47981835)
chr4 (251-299)||(28662391-28662439)
[»] chr8 (8 HSPs)
chr8 (454-907)||(38355378-38355824)
chr8 (215-326)||(38966033-38966144)
chr8 (215-326)||(15556926-15557037)
chr8 (18-126)||(15554381-15554489)
chr8 (230-325)||(21662284-21662376)
chr8 (257-314)||(3793914-3793971)
chr8 (237-311)||(7736623-7736698)
chr8 (230-275)||(5016877-5016922)
[»] chr7 (9 HSPs)
chr7 (215-326)||(13956463-13956574)
chr7 (215-326)||(36497848-36497959)
chr7 (223-326)||(21979906-21980009)
chr7 (265-314)||(35846463-35846512)
chr7 (265-314)||(37741470-37741519)
chr7 (251-297)||(33509948-33509994)
chr7 (238-294)||(20501190-20501246)
chr7 (255-295)||(24999900-24999940)
chr7 (251-297)||(33617542-33617588)
[»] chr5 (5 HSPs)
chr5 (215-326)||(24315795-24315906)
chr5 (215-326)||(24358128-24358239)
chr5 (251-299)||(7320625-7320673)
chr5 (268-308)||(16959031-16959071)
chr5 (266-299)||(2310851-2310884)
[»] chr6 (4 HSPs)
chr6 (224-326)||(12113345-12113447)
chr6 (232-326)||(7704174-7704268)
chr6 (230-321)||(6046595-6046686)
chr6 (263-312)||(8542063-8542112)
[»] chr3 (9 HSPs)
chr3 (230-325)||(37236173-37236268)
chr3 (230-326)||(1850952-1851047)
chr3 (230-325)||(31237765-31237860)
chr3 (265-326)||(19747388-19747449)
chr3 (233-314)||(12870786-12870868)
chr3 (265-314)||(50430123-50430172)
chr3 (265-314)||(6232631-6232680)
chr3 (248-314)||(49308921-49308987)
chr3 (258-314)||(52739940-52739996)
[»] chr2 (5 HSPs)
chr2 (230-325)||(25951005-25951100)
chr2 (230-314)||(30860164-30860245)
chr2 (258-298)||(8176146-8176186)
chr2 (234-297)||(5320215-5320279)
chr2 (258-299)||(8143500-8143541)
[»] chr1 (7 HSPs)
chr1 (230-325)||(17177221-17177316)
chr1 (230-314)||(13342738-13342822)
chr1 (230-314)||(42541372-42541456)
chr1 (230-287)||(43861670-43861727)
chr1 (249-311)||(24019536-24019598)
chr1 (291-325)||(43861719-43861753)
chr1 (263-309)||(51484418-51484464)
[»] scaffold0025 (1 HSPs)
scaffold0025 (265-314)||(47042-47091)


Alignment Details
Target: chr4 (Bit Score: 428; Significance: 0; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 428; E-Value: 0
Query Start/End: Original strand, 457 - 907
Target Start/End: Original strand, 47982497 - 47982948
Alignment:
Q  457 cattcattattgatatagttccaaatcagcatta-aaaaattggaagatgataatggtatgtttcagtttggtttttataacattgatttaaagatgtca 555  Q
    |||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47982497 cattcattattgatattgttccaaatcagcattagaaaaattggaagatgataatggtatgtttcagtttggtttttataacattgatttaaagatgtca 47982596  T
Q  556 acgcaagttaagctactatttttggatatatcaaatcctctactgcgctgcacacaatcttatggaggagagtcattgtatggtgtatctgagttcatta 655  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||    
T  47982597 acgcaagttaacctactatttttggatatatcaaatcctctactgcgctgcacacaatctgttggaggagagtcattgtatggtgtatctgagttcatta 47982696  T
Q  656 tttttaccttttacaggcatatgaagatttaaataattccaaaaaagctatgttgattttatatatttgattataagaaaacttaacttattgaaataca 755  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47982697 tttttaccttttacaggcatatgaagatttaaataattccaaaaaagctatgttgattttatatatttgattataagaaaacttaacttattgaaataca 47982796  T
Q  756 atgtggttttactcatttcaattttagactctaaacaaattctccacagtagaaattgcagtagtttgtgtaatgtttactgtcattgttgaatggattt 855  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47982797 atgtggttttactcatttcaattttagactctaaacaaattctccacagtagaaattgcagtagtttgtgtaatgtttactgtcattgttgaatggattt 47982896  T
Q  856 aatgtttctttatatgtttctctaccattatagttttcattgttcttctcac 907  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47982897 aatgtttctttatatgtttctctaccattatagttttcattgttcttctcac 47982948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 115; E-Value: 6e-58
Query Start/End: Original strand, 18 - 144
Target Start/End: Original strand, 47981540 - 47981666
Alignment:
Q  18 ccttgttctgttctaccataccaagtatcaatggcatcaagttctgctattggaactctagttcttggtgctctctctactccccatgcaattgcaccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  47981540 ccttgttctgttctaccataccaagtatcaatggcatcaagttctcctattggaactctagttcttggtgctctctctactccccccgcaattgcaccaa 47981639  T
Q  118 gacagaaaatgaaatgaattttaagtg 144  Q
    |||||||||||||||||||||||||||    
T  47981640 gacagaaaatgaaatgaattttaagtg 47981666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 223 - 326
Target Start/End: Complemental strand, 3887853 - 3887750
Alignment:
Q  223 atgagtttgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtc 322  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3887853 atgagtatgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtc 3887754  T
Q  323 ctac 326  Q
    ||||    
T  3887753 ctac 3887750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 32414737 - 32414643
Alignment:
Q  232 tatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtcctac 326  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||    
T  32414737 tatgaatttatatgcaatatatatgaatttttaaatttggtaggatcttacgatccgtgttacgatcctccgattcacgatttcatgggtcctac 32414643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 232 - 326
Target Start/End: Original strand, 32416562 - 32416655
Alignment:
Q  232 tatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtcctac 326  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||    
T  32416562 tatgaatttatatgca-tatatatgaatttttaaatttggtaggatcttacgaaccgtgttacgatcctccgattcacgatctcatgggtcctac 32416655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 215 - 287
Target Start/End: Original strand, 47981736 - 47981808
Alignment:
Q  215 gttgcttcatgagtttgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatcc 287  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  47981736 gttgcttcatgagtatgtatgaatttatatgcaatatatatgaatttttaaatttggtaggatcttacgatcc 47981808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 12582779 - 12582836
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatcc 287  Q
    |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  12582779 tgtatgaatttatatgcaatttatacgaatttctaaatttggtaggatcttacgatcc 12582836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 339 - 397
Target Start/End: Original strand, 47992009 - 47992067
Alignment:
Q  339 aaaagacagtacaatttcatgtgtacattgttggcaaaatatttggtatatttatataa 397  Q
    ||||||||||||| |||||||||||  ||| ||||||| ||||||||||||||||||||    
T  47992009 aaaagacagtacagtttcatgtgtattttgctggcaaagtatttggtatatttatataa 47992067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 5577275 - 5577226
Alignment:
Q  265 aatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||||||||||||||||||||||||||||||||  ||||| |||||||    
T  5577275 aatttggtaggatcttacgatccgtgttacgatccatcgatttacgatct 5577226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 12582828 - 12582863
Alignment:
Q  291 ttacgatcccccgattcacgatctcatgggtcctac 326  Q
    ||||||||||||||||||||||||||||||||||||    
T  12582828 ttacgatcccccgattcacgatctcatgggtcctac 12582863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 47981800 - 47981835
Alignment:
Q  291 ttacgatcccccgattcacgatctcatgggtcctac 326  Q
    ||||||||||||||||||||||||||||||||||||    
T  47981800 ttacgatcccccgattcacgatctcatgggtcctac 47981835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 28662391 - 28662439
Alignment:
Q  251 tatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcc 299  Q
    ||||| |||||||||||||||||||||||||| ||| ||||| ||||||    
T  28662391 tatataaatttctaaatttggtaggatcttacaatctgtgttgcgatcc 28662439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 276; Significance: 1e-154; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 454 - 907
Target Start/End: Original strand, 38355378 - 38355824
Alignment:
Q  454 atgcattcattattgatatagttccaaatcagcattaaaaaatt-ggaagatgataatggtatgtttcagtttggtttttataa-cattgatttaaagat 551  Q
    |||||||||| |||||||| ||||||||||||||||| |||||| ||||||||||| |  | || ||||||||||||||||||| ||||||    |||||    
T  38355378 atgcattcatcattgatattgttccaaatcagcattagaaaatttggaagatgatagta-tctgattcagtttggtttttataaacattga----aagat 38355472  T
Q  552 gtcaacgcaagttaagctactatttttggatatatcaaatcctctactgcgctgcacacaatcttatggaggagagtcattgtatggtgtatctgagttc 651  Q
    ||| ||||||||| ||||||||||||||||||||||||||||||||||||  |||||||| |||  ||||| ||| | ||||||||||||||||||||||    
T  38355473 gtcgacgcaagttgagctactatttttggatatatcaaatcctctactgctttgcacacagtctgttggagtagaat-attgtatggtgtatctgagttc 38355571  T
Q  652 attatttttaccttttacaggcatatgaagatttaaataattccaaaaaagctatgttgattttatatatttgattataagaaaacttaacttattgaaa 751  Q
    |||||||||||| ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  38355572 attatttttaccctttacagtcatatgaagatttaaataattctaaaaaagctatgttgattttatatatttgattataagaaaactt-acttattgaaa 38355670  T
Q  752 tacaatgtggttttactcatttcaattttagactctaaacaaattctccacagtagaaattgcagtagtttgtgtaatgtttactgtcattgttgaatgg 851  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| |||| |||| ||||||||||||||||||||||||||     
T  38355671 tacaatgtggttttactcatttcaattttagactctaaacaaattctccttagtagaaattgaagtactttgcgtaatgtttactgtcattgttgaatga 38355770  T
Q  852 atttaatgtttctttatatgtttctctaccattatagttttcattgttcttctcac 907  Q
    ||||||||||  |||||||||||||||  ||||||||||||||||||| |||||||    
T  38355771 atttaatgtt--tttatatgtttctctgtcattatagttttcattgtttttctcac 38355824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 215 - 326
Target Start/End: Original strand, 38966033 - 38966144
Alignment:
Q  215 gttgcttcatgagtttgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38966033 gttgcttcatgagtatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 38966132  T
Q  315 catgggtcctac 326  Q
    ||||||||||||    
T  38966133 catgggtcctac 38966144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 215 - 326
Target Start/End: Original strand, 15556926 - 15557037
Alignment:
Q  215 gttgcttcatgagtttgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15556926 gttgcttcatgagtaagtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 15557025  T
Q  315 catgggtcctac 326  Q
    ||||||| ||||    
T  15557026 catgggttctac 15557037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 18 - 126
Target Start/End: Original strand, 15554381 - 15554489
Alignment:
Q  18 ccttgttctgttctaccataccaagtatcaatggcatcaagttctgctattggaactctagttcttggtgctctctctactccccatgcaattgcaccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| ||||||||||||||    
T  15554381 ccttgttctgttctaccataccaagtatcaatggcatcaagttctactattggaactctagttcttggtgctctctctgctccccctgcaattgcaccaa 15554480  T
Q  118 gacagaaaa 126  Q
    | |||||||    
T  15554481 ggcagaaaa 15554489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 3e-26
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 21662284 - 21662376
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtccta 325  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||   ||||||||| ||||||| |||||| |||||||||    
T  21662284 tgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatccg---tacgatccctcgattcatgatctcgtgggtccta 21662376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 257 - 314
Target Start/End: Original strand, 3793914 - 3793971
Alignment:
Q  257 aatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3793914 aatttgtaaatttggtaggatcttacgatccgtgttacgatctcccgattcacgatct 3793971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 237 - 311
Target Start/End: Complemental strand, 7736698 - 7736623
Alignment:
Q  237 atttatatgca-atatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacga 311  Q
    ||||||||||| |||| ||| ||||| | ||  |||||||||||||||||||||||||||||| | | ||||||||    
T  7736698 atttatatgcatatatttataaatttgtgaaaatggtaggatcttacgatccgtgttacgatcactcaattcacga 7736623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 230 - 275
Target Start/End: Original strand, 5016877 - 5016922
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtagg 275  Q
    ||||||||| || ||||||||||| |||||||||||||||| ||||    
T  5016877 tgtatgaatatacatgcaatatatttgaatttctaaatttgatagg 5016922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 104; Significance: 2e-51; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 215 - 326
Target Start/End: Complemental strand, 13956574 - 13956463
Alignment:
Q  215 gttgcttcatgagtttgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13956574 gttgcttcatgagtatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 13956475  T
Q  315 catgggtcctac 326  Q
    ||||||||||||    
T  13956474 catgggtcctac 13956463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 215 - 326
Target Start/End: Original strand, 36497848 - 36497959
Alignment:
Q  215 gttgcttcatgagtttgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    ||||||||||||||  ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36497848 gttgcttcatgagtaagtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 36497947  T
Q  315 catgggtcctac 326  Q
    ||||||||||||    
T  36497948 catgggtcctac 36497959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 223 - 326
Target Start/End: Original strand, 21979906 - 21980009
Alignment:
Q  223 atgagtttgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtc 322  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||     
T  21979906 atgagtatgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtattacgatcccccgattcacgatctcaagggtt 21980005  T
Q  323 ctac 326  Q
    ||||    
T  21980006 ctac 21980009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 35846512 - 35846463
Alignment:
Q  265 aatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  35846512 aatttggtaagatcttacgatctgtgttacgatcccccgattcacgatct 35846463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 37741519 - 37741470
Alignment:
Q  265 aatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||||||||||||| ||||||||||||||||| ||||||| |||||||    
T  37741519 aatttggtaggatcttgcgatccgtgttacgatctcccgatttacgatct 37741470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 33509948 - 33509994
Alignment:
Q  251 tatatgaatttctaaatttggtaggatcttacgatccgtgttacgat 297  Q
    ||||| ||||||||||||||||||| ||||||||||| |||||||||    
T  33509948 tatataaatttctaaatttggtaggttcttacgatccatgttacgat 33509994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 238 - 294
Target Start/End: Complemental strand, 20501246 - 20501190
Alignment:
Q  238 tttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttac 294  Q
    |||||||||||||||||||||||| | |||| |||| |||||| |||| ||||||||    
T  20501246 tttatatgcaatatatatgaatttatgaattcggtaagatcttgcgattcgtgttac 20501190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 24999900 - 24999940
Alignment:
Q  255 tgaatttctaaatttggtaggatcttacgatccgtgttacg 295  Q
    ||||||| | |||||||||||||||||||||||||||||||    
T  24999900 tgaatttgtcaatttggtaggatcttacgatccgtgttacg 24999940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 251 - 297
Target Start/End: Original strand, 33617542 - 33617588
Alignment:
Q  251 tatatgaatttctaaatttggtaggatcttacgatccgtgttacgat 297  Q
    ||||| ||||||||||||||||||| ||||||||||| |||| ||||    
T  33617542 tatataaatttctaaatttggtaggttcttacgatccatgttgcgat 33617588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 6e-49; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 215 - 326
Target Start/End: Complemental strand, 24315906 - 24315795
Alignment:
Q  215 gttgcttcatgagtttgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24315906 gttgcttcatgagtatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatctgtgttacgatcccccgattcacgatct 24315807  T
Q  315 catgggtcctac 326  Q
    ||||||||||||    
T  24315806 catgggtcctac 24315795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 215 - 326
Target Start/End: Complemental strand, 24358239 - 24358128
Alignment:
Q  215 gttgcttcatgagtttgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  24358239 gttgcttcatgagtatgtatgaattcatatgcaatatatatgaatttctaaatttggtaggatcttacgatctgtgttacgatcccccgattcacgatct 24358140  T
Q  315 catgggtcctac 326  Q
    ||||||||||||    
T  24358139 catgggtcctac 24358128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 251 - 299
Target Start/End: Original strand, 7320625 - 7320673
Alignment:
Q  251 tatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcc 299  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  7320625 tatataaatttctaaatttggtaggatcttacgatccgtgttacgatcc 7320673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 268 - 308
Target Start/End: Original strand, 16959031 - 16959071
Alignment:
Q  268 ttggtaggatcttacgatccgtgttacgatcccccgattca 308  Q
    ||||||||||||||| |||||||||||||||||||||||||    
T  16959031 ttggtaggatcttacaatccgtgttacgatcccccgattca 16959071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 266 - 299
Target Start/End: Original strand, 2310851 - 2310884
Alignment:
Q  266 atttggtaggatcttacgatccgtgttacgatcc 299  Q
    ||||||| ||||||||||||||||||||||||||    
T  2310851 atttggtgggatcttacgatccgtgttacgatcc 2310884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 95; Significance: 5e-46; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 95; E-Value: 5e-46
Query Start/End: Original strand, 224 - 326
Target Start/End: Original strand, 12113345 - 12113447
Alignment:
Q  224 tgagtttgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtcc 323  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  12113345 tgagtatgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatcttatgggtcc 12113444  T
Q  324 tac 326  Q
    |||    
T  12113445 tac 12113447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 232 - 326
Target Start/End: Complemental strand, 7704268 - 7704174
Alignment:
Q  232 tatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtcctac 326  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  7704268 tatgaatttatatgcaatatatatgaacttttaaatttggtaggatcttacgatccgtgttacgatcctccgattcacgatctcatgggtcctac 7704174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 64; E-Value: 2e-27
Query Start/End: Original strand, 230 - 321
Target Start/End: Original strand, 6046595 - 6046686
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggt 321  Q
    |||||||||||||||||||||||||| ||||| |||||||||||||||||||| |||||| ||||||| |||| ||||||||||| ||||||    
T  6046595 tgtatgaatttatatgcaatatatataaatttttaaatttggtaggatcttacaatccgtattacgattccccaattcacgatcttatgggt 6046686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 263 - 312
Target Start/End: Original strand, 8542063 - 8542112
Alignment:
Q  263 taaatttggtaggatcttacgatccgtgttacgatcccccgattcacgat 312  Q
    |||||||||||||||||| |||||| |||||||||||  | |||||||||    
T  8542063 taaatttggtaggatcttccgatccatgttacgatcctgctattcacgat 8542112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 84; Significance: 2e-39; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 37236268 - 37236173
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtccta 325  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37236268 tgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcgtgggtccta 37236173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 230 - 326
Target Start/End: Original strand, 1850952 - 1851047
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtcctac 326  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||    
T  1850952 tgtatgaatttatatgtaatatatatgaatttctaaatttggtaggatcttacaatccgtg-tacgatcccccgattcacgatctcatgggtcctac 1851047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 31237765 - 31237860
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtccta 325  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||| | |||||||||    
T  31237765 tgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatccgtgttatgatcccccaattcacgatcgcgtgggtccta 31237860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 265 - 326
Target Start/End: Complemental strand, 19747449 - 19747388
Alignment:
Q  265 aatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtcctac 326  Q
    ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||    
T  19747449 aatttggtaggatcttacgatccatgttaggatcccccgattcacgatctcatgggtcctac 19747388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 233 - 314
Target Start/End: Complemental strand, 12870868 - 12870786
Alignment:
Q  233 atgaatttatatgca-atatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    ||||||||||| ||| |||||| |  |||| | |||||||||||||||||||||||||||||||||||||||||| |||||||    
T  12870868 atgaatttataggcatatatatgtagatttgtgaatttggtaggatcttacgatccgtgttacgatcccccgatttacgatct 12870786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 265 - 314
Target Start/End: Complemental strand, 50430172 - 50430123
Alignment:
Q  265 aatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||    
T  50430172 aatttggtaggatcttacgatccgtgttacgatccctcgattcacgatct 50430123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 6232631 - 6232680
Alignment:
Q  265 aatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||||||| ||||||||||||||||||||||| || ||||||||||||    
T  6232631 aatttggtagaatcttacgatccgtgttacgatctcctgattcacgatct 6232680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 248 - 314
Target Start/End: Original strand, 49308921 - 49308987
Alignment:
Q  248 atatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||| | ||||| | ||||||||||||| || |||||| |||||| |||||||||||||||||||    
T  49308921 atatatgtcaatttttgaatttggtaggatattccgatccttgttacaatcccccgattcacgatct 49308987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 258 - 314
Target Start/End: Original strand, 52739940 - 52739996
Alignment:
Q  258 atttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||| ||||||||||||||||||||||| | ||||||||||| || ||| |||||||    
T  52739940 atttttaaatttggtaggatcttacgattcatgttacgatcctccaatttacgatct 52739996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 76; Significance: 1e-34; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 230 - 325
Target Start/End: Complemental strand, 25951100 - 25951005
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtccta 325  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||  ||||||||||||||||||||||||||| |||||||||    
T  25951100 tgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatctatgttacgatcccccgattcacgatctcgtgggtccta 25951005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 30860245 - 30860164
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||||||  ||||||||||||||  || || ||||||||||||||||||| ||||||||||||||||||| ||||||| ||||    
T  30860245 tgtatgaatagatatgcaatatata--aagtt-taaatttggtaggatcttatgatccgtgttacgatcccctgattcacaatct 30860164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 258 - 298
Target Start/End: Original strand, 8176146 - 8176186
Alignment:
Q  258 atttctaaatttggtaggatcttacgatccgtgttacgatc 298  Q
    ||||||||||||||||||||||||| |||||||||||||||    
T  8176146 atttctaaatttggtaggatcttacaatccgtgttacgatc 8176186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 234 - 297
Target Start/End: Complemental strand, 5320279 - 5320215
Alignment:
Q  234 tgaatttatatgca-atatatatgaatttctaaatttggtaggatcttacgatccgtgttacgat 297  Q
    |||||||||| ||| |||||| | ||||| | |||||| ||||||||||||||||||||||||||    
T  5320279 tgaatttataggcatatatatgtcaatttgtgaatttgataggatcttacgatccgtgttacgat 5320215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 8143500 - 8143541
Alignment:
Q  258 atttctaaatttggtaggatcttacgatccgtgttacgatcc 299  Q
    ||||||||||||||||||||||||| |||| ||||| |||||    
T  8143500 atttctaaatttggtaggatcttacaatccatgttatgatcc 8143541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 1e-34; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 230 - 325
Target Start/End: Original strand, 17177221 - 17177316
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatctcatgggtccta 325  Q
    |||||||||||||||  ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17177221 tgtatgaatttatattgaatatatatgaatttttaaatttgataggatcttacgatccgtgttacgatcccccgattcacgatctcgtgggtccta 17177316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 230 - 314
Target Start/End: Original strand, 13342738 - 13342822
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    |||||||||  ||||||||| |||| |||||| |||||||||||||||||||||||||||||||| ||| ||| |||||||||||    
T  13342738 tgtatgaatcgatatgcaatgtataggaatttataaatttggtaggatcttacgatccgtgttacaatctcccaattcacgatct 13342822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 6e-21
Query Start/End: Original strand, 230 - 314
Target Start/End: Complemental strand, 42541456 - 42541372
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    ||||||||| |||||||||||  ||||||||||| ||||||||||||||||| || ||||||| ||||||||||||||| |||||    
T  42541456 tgtatgaatctatatgcaatacgtatgaatttctgaatttggtaggatcttaagacccgtgttgcgatcccccgattcatgatct 42541372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 230 - 287
Target Start/End: Original strand, 43861670 - 43861727
Alignment:
Q  230 tgtatgaatttatatgcaatatatatgaatttctaaatttggtaggatcttacgatcc 287  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||    
T  43861670 tgtatgaatttatatggaatatatatgaatttttaaatttggtaggatcttacgatcc 43861727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 249 - 311
Target Start/End: Complemental strand, 24019598 - 24019536
Alignment:
Q  249 tatatatgaatttctaaatttggtaggatcttacgatccgtgttacgatcccccgattcacga 311  Q
    ||||||| ||||| | || ||||||||||||||| ||||||| ||| ||| ||||||||||||    
T  24019598 tatatataaatttgtgaaattggtaggatcttacaatccgtgctacaatctcccgattcacga 24019536  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 291 - 325
Target Start/End: Original strand, 43861719 - 43861753
Alignment:
Q  291 ttacgatcccccgattcacgatctcatgggtccta 325  Q
    ||||||||||||||||||||||||| |||||||||    
T  43861719 ttacgatcccccgattcacgatctcgtgggtccta 43861753  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 263 - 309
Target Start/End: Original strand, 51484418 - 51484464
Alignment:
Q  263 taaatttggtaggatcttacgatccgtgttacgatcccccgattcac 309  Q
    |||||||||||||||||| |||||||||||| |||||  ||||||||    
T  51484418 taaatttggtaggatcttccgatccgtgttatgatcctgcgattcac 51484464  T

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Target: scaffold0025 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 47042 - 47091
Alignment:
Q  265 aatttggtaggatcttacgatccgtgttacgatcccccgattcacgatct 314  Q
    ||||||||||||||||||||||||||||||||||| |||||| |||||||    
T  47042 aatttggtaggatcttacgatccgtgttacgatcctccgatttacgatct 47091  T

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