View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_34 (Length: 369)
Name: NF12882_low_34
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_34 |
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Alignment Details
Target: chr2 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 211 - 359
Target Start/End: Original strand, 14566872 - 14567020
Alignment:
| Q |
211 |
aacatcaacactgttctgttccggtcacaccatctag---ggttgaatcgtcttcttcaacaaaacccattccaatgttcaaggcgtttctcttccgcaa |
307 |
Q |
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| T |
14566872 |
aacatcaacactgttctggtca---cacaccatctagcggggttgaatcgtcttcttcaacaaaacccattccaatgttcaagccgtttctcttccgcaa |
14566968 |
T |
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| Q |
308 |
tgcttttggcctatcaacaacaccactctaccaaatttctatcagattcttc |
359 |
Q |
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| T |
14566969 |
tgcttttggcctatcaacaacaccactctaccaaatttctatcagattcttc |
14567020 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 17 - 166
Target Start/End: Original strand, 14566721 - 14566863
Alignment:
| Q |
17 |
catgaaaatgaccaaaaagatcaacggtagataactaacgtcagttttctagttataagctaccgctggccgggggtattttagagtgttattagaaact |
116 |
Q |
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| T |
14566721 |
catgaaaatgatcaaaaa-atcaactgtagttaactaaggtcggctttctagttataagctaccgctcga-----gaattttagagtgttattagaaact |
14566814 |
T |
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| Q |
117 |
ttttgaagttaagaaaagcaattttcattcaaaaaatcagcggccccagc |
166 |
Q |
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| T |
14566815 |
tttcgaagtta-gaaaagcaattttcattcgaaaaatcagcggccccagc |
14566863 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 267 - 340
Target Start/End: Original strand, 14554429 - 14554502
Alignment:
| Q |
267 |
acaaaacccattccaatgttcaaggcgtttctcttccgcaatgcttttggcctatcaacaacaccactctacca |
340 |
Q |
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| T |
14554429 |
acaaaaccaattccaatgttgaaggcacttctctgccgcaatccatttggcatatcaacaacaacactctacca |
14554502 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 249 - 340
Target Start/End: Complemental strand, 38525480 - 38525383
Alignment:
| Q |
249 |
gttgaatcgtcttcttcaacaaaacccattccaat------gttcaaggcgtttctcttccgcaatgcttttggcctatcaacaacaccactctacca |
340 |
Q |
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| T |
38525480 |
gttgaatcgtcttcttcaacaaaacccattccaattccaatgttcaaaccgtttctcttcctcaacgcttttggcctatcaacaacaccactctacca |
38525383 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 30513936 - 30513878
Alignment:
| Q |
17 |
catgaaaatgaccaaaaagatcaacggtagataactaacgtcagttttctagttataag |
75 |
Q |
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| T |
30513936 |
catgaaaaagactaaaaagcccagcggtagttaactaccgtcagttttctagttataag |
30513878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 30554276 - 30554218
Alignment:
| Q |
17 |
catgaaaatgaccaaaaagatcaacggtagataactaacgtcagttttctagttataag |
75 |
Q |
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| T |
30554276 |
catgaaaaagactaaaaagcccagcggtagttaactaccgtcagttttctagttataag |
30554218 |
T |
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