View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_35 (Length: 365)
Name: NF12882_low_35
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_35 |
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Alignment Details
Target: chr4 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 15 - 347
Target Start/End: Original strand, 51023431 - 51023763
Alignment:
| Q |
15 |
tcactggtaggaagatcattattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtgg |
114 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51023431 |
tcactggtaggaagatcatcattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtgg |
51023530 |
T |
|
| Q |
115 |
agcttacattgtgaggcaagctgctaagagcattgttgcaagtggacttgcaaggaggtgcattgtgcaagtgtcctatgctattggtgtgcctgaacct |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
51023531 |
agcttacattgtgaggcaagctgctaagagcattgttgcaagtggacttgcaaggaggtgcattgtgcaagtctcctatgctattggtgtgcctgaacct |
51023630 |
T |
|
| Q |
215 |
ctgtctgtgtttgttgacacgtatggtacagggaagatccctgataaggagatcctgaatattgtgaagcagaactttgatttcaggcctgggatgatct |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51023631 |
ctgtctgtgtttgttgacacgtatggtacagggaagatccctgataaggagatcctgaatattgtgaagcagaactttgatttcaggcctgggatgatct |
51023730 |
T |
|
| Q |
315 |
ctatcaaccttgatctcttgaggggtggcaatg |
347 |
Q |
| |
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||||||||||||||||||||||||||||||||| |
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| T |
51023731 |
ctatcaaccttgatctcttgaggggtggcaatg |
51023763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 141; Significance: 7e-74; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 26 - 330
Target Start/End: Complemental strand, 20525484 - 20525180
Alignment:
| Q |
26 |
aagatcattattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtggagcttacattg |
125 |
Q |
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|||||||| || || ||||||||||||||||||||||| ||||||||||||||||| || ||||| ||||| || || |||||||||||||||||||||| |
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| T |
20525484 |
aagatcatcatcgatacttatggtggttggggtgcacacggtggtggtgctttctccggtaaagatccaacaaaagtcgacaggagtggagcttacattg |
20525385 |
T |
|
| Q |
126 |
tgaggcaagctgctaagagcattgttgcaagtggacttgcaaggaggtgcattgtgcaagtgtcctatgctattggtgtgcctgaacctctgtctgtgtt |
225 |
Q |
| |
|
|||| |||||||| ||||| |||||||| | |||||||| || ||||||||||||||||| ||||||||||| ||||| || || || |||||||||| |
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|
| T |
20525384 |
tgagacaagctgcaaagagtattgttgctaacggacttgctagaaggtgcattgtgcaagtttcctatgctatcggtgttccagagccattgtctgtgtt |
20525285 |
T |
|
| Q |
226 |
tgttgacacgtatggtacagggaagatccctgataaggagatcctgaatattgtgaagcagaactttgatttcaggcctgggatgatctctatcaacctt |
325 |
Q |
| |
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|||||| | || ||||| || ||||||||||||||||| ||||| || ||||||||| | | |||||| |||||||| || ||||||||||| |||||| |
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| T |
20525284 |
tgttgattcttacggtaccggaaagatccctgataaggaaatccttaacattgtgaaggaaacctttgacttcaggccaggaatgatctctattaacctt |
20525185 |
T |
|
| Q |
326 |
gatct |
330 |
Q |
| |
|
||||| |
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|
| T |
20525184 |
gatct |
20525180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 15 - 138
Target Start/End: Complemental strand, 27718388 - 27718265
Alignment:
| Q |
15 |
tcactggtaggaagatcattattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtgg |
114 |
Q |
| |
|
||||||| |||||||| |||||||| || ||||||||||||||||| |||||||| ||||| ||||||||||| || ||||| ||||| ||||||||||| |
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| T |
27718388 |
tcactggaaggaagattattattgatacctatggtggttggggtgctcatggtggaggtgccttctcaggaaaggatccaaccaaggtggacaggagtgg |
27718289 |
T |
|
| Q |
115 |
agcttacattgtgaggcaagctgc |
138 |
Q |
| |
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||||||||||| ||||||||||| |
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|
| T |
27718288 |
tgcttacattgttaggcaagctgc |
27718265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 68; Significance: 3e-30; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 26 - 313
Target Start/End: Original strand, 45208438 - 45208725
Alignment:
| Q |
26 |
aagatcattattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtggagcttacattg |
125 |
Q |
| |
|
||||| || ||||| ||||||||||| |||||||| || ||||| ||||| ||||||||||| |||||||| ||||||||||| ||||| || || ||| |
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|
| T |
45208438 |
aagattataattgatacttatggtggctggggtgctcacggtggaggtgccttctcaggaaaggacccaaccaaggttgacagaagtggtgcctatgttg |
45208537 |
T |
|
| Q |
126 |
tgaggcaagctgctaagagcattgttgcaagtggacttgcaaggaggtgcattgtgcaagtgtcctatgctattggtgtgcctgaacctctgtctgtgtt |
225 |
Q |
| |
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| ||||| || || ||||| || || || | || ||||| | || |||||||| ||||| || ||||| |||||||||||||||||| |||| || || |
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| T |
45208538 |
taaggcaggcagccaagagtatagtggccaacggtcttgctcgcagatgcattgttcaagtttcatatgccattggtgtgcctgaacctttgtcggtctt |
45208637 |
T |
|
| Q |
226 |
tgttgacacgtatggtacagggaagatccctgataaggagatcctgaatattgtgaagcagaactttgatttcaggcctgggatgatc |
313 |
Q |
| |
|
|||||||| ||||| || || ||||| ||||| | |||||| || | ||||||||| |||| || || ||||| ||||| |||||| |
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| T |
45208638 |
tgttgacagttatggaactggaaagattcctgacagggagattcttcaaattgtgaaggagaatttcgacttcagacctggaatgatc |
45208725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 135
Target Start/End: Original strand, 41213527 - 41213647
Alignment:
| Q |
15 |
tcactggtaggaagatcattattgacacttatggtggttggggtgcacatggtggtggtgctttctcaggaaaagacccaactaaggttgacaggagtgg |
114 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||| ||||| || ||||| ||||| || || |||||||| ||||| || || ||||| |
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| T |
41213527 |
tcactggtaggaagatcattattgacacctatggtggctggggtgctcatggaggaggtgccttctctggcaaggacccaaccaaggtcgatagaagtgg |
41213626 |
T |
|
| Q |
115 |
agcttacattgtgaggcaagc |
135 |
Q |
| |
|
|| || ||||| |||||||| |
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|
| T |
41213627 |
ggcatatattgttaggcaagc |
41213647 |
T |
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