View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_38 (Length: 334)
Name: NF12882_low_38
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_38 |
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Alignment Details
Target: chr5 (Bit Score: 293; Significance: 1e-164; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 19 - 319
Target Start/End: Original strand, 37835271 - 37835571
Alignment:
| Q |
19 |
acaaaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835271 |
acaaaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctg |
37835370 |
T |
|
| Q |
119 |
atgggttgatactgttgtcactcatgacacactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37835371 |
atgggttgatactgttgtcactcatgacacactggacttttattcctccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggt |
37835470 |
T |
|
| Q |
219 |
tggtgttcaatgtgactataatcatcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattgtgaaccttcat |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
37835471 |
tggtgttcaatgtgactataatcatcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattttgaaccttcat |
37835570 |
T |
|
| Q |
319 |
c |
319 |
Q |
| |
|
| |
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|
| T |
37835571 |
c |
37835571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 37840896 - 37841178
Alignment:
| Q |
22 |
aaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatg |
121 |
Q |
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||||||||| |||||||||||| | ||||||| |||| | | || | ||||||||||||| |||||||||||||| ||||||| | |||||| |||||| |
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| T |
37840896 |
aaccttgtctaaatgactagaatttgttgtagtagtagaattatcaaactcttgttgattgtttccttcttgcatggtggttttgcacttaccactgatg |
37840995 |
T |
|
| Q |
122 |
ggttgatactgttgtcactcatgacacactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttgg |
221 |
Q |
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|||||| |||||||||||| |||| |||||||| ||| ||| |||| | ||||| |||| ||||| || |||||||||| |||||||||||||||||| |
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| T |
37840996 |
ggttgactctgttgtcactcttgactcactggacctttgttcctcctctcatcaactctagttggaaagcttctgattcaattccatgctcatgggttgg |
37841095 |
T |
|
| Q |
222 |
tgttcaatgtgactataatcatcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattg |
307 |
Q |
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||||||||||||| || | || | ||||||||||| |||| ||||||| | ||||||| ||||||||||||| ||||||||| |
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| T |
37841096 |
tgttcaatgtgaccat-acca--acaatgtcatttccattaatctcactaaccatgggattcttggtcaacttggaccagaaattg |
37841178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 307
Target Start/End: Original strand, 37829570 - 37829855
Alignment:
| Q |
22 |
aaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgttg---attatttccttcttgcatagtggtttgactcttacctctg |
118 |
Q |
| |
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||||||||| |||||||||||| |||||||||||||||| | || ||| |||||||| |||||||||||||| || ||| | |||||||||||| |
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| T |
37829570 |
aaccttgtctaaatgactagaattagttgtagcagtaaaattatcacaatcttgttgtcgattatttccttcttctatggtgctactgctcttacctctg |
37829669 |
T |
|
| Q |
119 |
atgggttgatactgttgtcactcatgacacactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggt |
218 |
Q |
| |
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|||| |||| || |||||||| |||||| ||||| ||| ||| ||| | ||||| |||| ||||| || |||||||| ||||||||||||||| |
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| T |
37829670 |
atggtttgactttgatgtcactcttgacacgttggacctttgttcctccgctaatcaactctagttggaaggcttctgattccgatccatgctcatgggt |
37829769 |
T |
|
| Q |
219 |
tggtgttcaatgtgactataatcatcataatgtcatttctcttaacctcactagtcgtgggatttttggtcaacttgggacagaaattg |
307 |
Q |
| |
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|||||||||||||||| ||| | ||||||||||||| |||| ||||||| ||| ||||||| ||||||||||||| ||||||||| |
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| T |
37829770 |
tggtgttcaatgtgaccata---cttataatgtcatttcccttagcctcactggtcatgggattattggtcaacttggaccagaaattg |
37829855 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 40 - 234
Target Start/End: Original strand, 37848670 - 37848864
Alignment:
| Q |
40 |
agaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcac |
139 |
Q |
| |
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|||||||| | |||||||| | | || |||| |||||||| ||||||||| |||||| ||| | |||||| || |||||| |||| |||||||||| |
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| T |
37848670 |
agaactagctatagcagtagaattatcacacacttgttgactatttcctttttgcatggtgctactgctcttaactatgatggtttgactctgttgtcac |
37848769 |
T |
|
| Q |
140 |
tcatgacacactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgac |
234 |
Q |
| |
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|||||||| ||||||| || ||| |||| | ||| | |||| ||||||| | |||||||| | ||||||||||||||||||||||| ||||||| |
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| T |
37848770 |
tcatgacagactggaccattgttcctcctatcatcgactctagctggaatccttctgattccaatccatgctcatgggttggtgttcgatgtgac |
37848864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 22 - 92
Target Start/End: Original strand, 37821328 - 37821401
Alignment:
| Q |
22 |
aaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgtt---gattatttccttctt |
92 |
Q |
| |
|
||||||||| |||||||||||| |||||||||||||||| | || ||| ||||||| ||||||||||||||| |
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| T |
37821328 |
aaccttgtctaaatgactagaattagttgtagcagtaaaattatcacaatcttgttgtcgattatttccttctt |
37821401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 35025783 - 35025714
Alignment:
| Q |
86 |
ccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggac |
155 |
Q |
| |
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||||||| ||| ||||||| ||||||| |||||||||||||| | ||||||||| ||||||||||||| |
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| T |
35025783 |
ccttcttacatggtggttttactcttaactctgatgggttgactttcttgtcactcttgacacactggac |
35025714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 191; Significance: 1e-103; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 19 - 261
Target Start/End: Original strand, 12281277 - 12281514
Alignment:
| Q |
19 |
acaaaccttgtccaaatgactagaactagttgtagcagtaaattcattacactcttgttgattatttccttcttgcatagtggtttgactcttacctctg |
118 |
Q |
| |
|
||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12281277 |
acaaaccttgtccaaatgattagaactagtcgtagcagtaaattcattacactcctgttgattatttccttcttgcatagtggtttgactcttacctcta |
12281376 |
T |
|
| Q |
119 |
atgggttgatactgttgtcactcatgacacactggacttttattcgtccttttatcaaatctacctggaatgcctctgattcaactccatgctcatgggt |
218 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12281377 |
atgggttgatactgttgtcattcatgacacactggacttttattcctccttttatcaaatccacctggaatgcctctgattcaactccatgctcatgggt |
12281476 |
T |
|
| Q |
219 |
tggtgttcaatgtgactataatcatcataatgtcatttctctt |
261 |
Q |
| |
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||||||| |||||||||| |||||||||||||||||||| |
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| T |
12281477 |
tggtgtttaatgtgacta-----atcataatgtcatttctctt |
12281514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 77 - 307
Target Start/End: Original strand, 36864093 - 36864320
Alignment:
| Q |
77 |
tgattatttccttcttgcatagtggtttgactcttacctctgatgggttgatactgttgtcactcatgacacactggacttttattcgtccttttatcaa |
176 |
Q |
| |
|
|||||||||||||||||||| ||||||| ||||||| |||| ||||||||| ||||||||||| |||| |||||||| ||| ||| |||| | ||||| |
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| T |
36864093 |
tgattatttccttcttgcatggtggttttactcttaactcttatgggttgactttgttgtcactcttgactcactggacctttgttcctcctctcatcaa |
36864192 |
T |
|
| Q |
177 |
atctacctggaatgcctctgattcaactccatgctcatgggttggtgttcaatgtgactataatcatcataatgtcatttctcttaacctcactagtcgt |
276 |
Q |
| |
|
|||| |||||| || |||||||| |||||| |||||| ||||||||||||| ||| || | || ||| | ||||| |||||||| | ||||| | |
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|
| T |
36864193 |
ctctagctggaaggcttctgattccgatccatgttcatggtttggtgttcaatgcgaccgta---agcagaatttgatttcacttaaccttaatagtcat |
36864289 |
T |
|
| Q |
277 |
gggatttttggtcaacttgggacagaaattg |
307 |
Q |
| |
|
| |||||||||||||||||| ||||||||| |
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|
| T |
36864290 |
gagatttttggtcaacttggaccagaaattg |
36864320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 289 - 318
Target Start/End: Original strand, 12281519 - 12281548
Alignment:
| Q |
289 |
caacttgggacagaaattgtgaaccttcat |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
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|
| T |
12281519 |
caacttgggacagaaattgtgaaccttcat |
12281548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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