View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_46 (Length: 272)
Name: NF12882_low_46
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_46 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 54 - 245
Target Start/End: Original strand, 46352832 - 46353023
Alignment:
| Q |
54 |
gtccattaatttagtcaaatatcctattgcacatagtaaaagcaaatagatagagataatgcttcattttttaagggatcacatgacaaaaggaaacttg |
153 |
Q |
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| T |
46352832 |
gtccattaatttagtccaatatcctattgcacatagtaaaagcaaatacatagagataatgcttcattttttaagggatcacatgacaaaaggaaacttg |
46352931 |
T |
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| Q |
154 |
gtttttcagcattgtaacactaatgtgcatattgcaaattccatgaccaagtcattgaacattgaaacttttgaaagattgagaagcatgat |
245 |
Q |
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| T |
46352932 |
gtttttcagcattgtaatactaatgtgcatattgcaaattccatgaccaagtcattgaacattgaaacttttgaaagattgagaagcatgat |
46353023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 44
Target Start/End: Original strand, 46352587 - 46352626
Alignment:
| Q |
5 |
gaggagcagagaggaaaatacaatgttcttaatggttaat |
44 |
Q |
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| T |
46352587 |
gaggatcaaagaggaaaatacaatgttcttaatggttaat |
46352626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 252
Target Start/End: Original strand, 21549237 - 21549281
Alignment:
| Q |
208 |
ttgaacattgaaacttttgaaagattgagaagcatgataggcatg |
252 |
Q |
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| T |
21549237 |
ttgaagattgaaacatttgaatgattgagaagcatgatgggcatg |
21549281 |
T |
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