View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_47 (Length: 272)
Name: NF12882_low_47
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_47 |
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Alignment Details
Target: chr1 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 261
Target Start/End: Original strand, 52724652 - 52724912
Alignment:
| Q |
1 |
cccgcgtcgtcttcgcttcttcctttgtacgtcgcagtcgcagtagccgccgcagcaaacgcaacaataagctcaaactctctgaccctaccaccatcat |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
52724652 |
cccgcgtcgtcttcgcttcttcctttgtacgtcgcagtcgcagtagccgacgcagcaaacgcaacaataagctcaaactctctgaccctaccaccaccat |
52724751 |
T |
|
| Q |
101 |
caccaccttctctgagcccaagctcgaaaccgtgatagacctctcaatcttcccttcctttcattccaatattcgtcaattcgtttcatctggtaaagag |
200 |
Q |
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|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52724752 |
caccaccttctctgagcccaagctcgaaaccgtcatagacctctcaatcttcccttcctttcattccaatattcgtcaattcgtttcatctggtaaagag |
52724851 |
T |
|
| Q |
201 |
gcataccgcgatttacagaccctattcactattgaccataaccgaagagtcatcatttcat |
261 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52724852 |
gcataccgcgatttacagaccctattcactattgaccataaccgaagagtcatcatttcat |
52724912 |
T |
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