View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_48 (Length: 268)
Name: NF12882_low_48
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_48 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 19 - 251
Target Start/End: Complemental strand, 50407263 - 50407031
Alignment:
| Q |
19 |
aaaagacacttttttctgtaatatgatcataaccattaaaaaaccagctagaccgagtgaaatatacaaaaacttgtaaaaaacaccaagttcgttgttc |
118 |
Q |
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| T |
50407263 |
aaaagacacttttttctgtaatatgatcataaccattaaaaaaccagctagaccgagtgaaatatacaaaaacttgtaaaaaacaccaagttcgttgttc |
50407164 |
T |
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| Q |
119 |
tgtttgaccggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaa |
218 |
Q |
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| T |
50407163 |
tgtttaaccggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaa |
50407064 |
T |
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| Q |
219 |
aataaatagcagaataaagttgtgtgataatag |
251 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
50407063 |
aataaatagcagaataaagttgtgtgataatag |
50407031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 50385122 - 50385004
Alignment:
| Q |
128 |
ggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatag |
227 |
Q |
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|||||||| |||||||| |||||||||||| ||| ||||| ||||| ||||||||| |||||| |||||||||||| |||| ||||||| ||||||||| |
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| T |
50385122 |
ggtttcatatatcgaatggttcgaagaaaagcaaacgaaatagcagcaggaagccaaccaataaacaaaatcaaagcctttgtgtcatcataataaatag |
50385023 |
T |
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| Q |
228 |
cagaataaagttgtgtgat |
246 |
Q |
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| T |
50385022 |
cagagtaaagctgtgtgat |
50385004 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 128 - 246
Target Start/End: Complemental strand, 50393541 - 50393423
Alignment:
| Q |
128 |
ggtttcatgtatcgaattgttcgaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatag |
227 |
Q |
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|||||||| || ||||| |||||||||||| ||| ||||| ||||| ||||||||| | |||| |||||||||||| |||| ||||||| | ||||||| |
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| T |
50393541 |
ggtttcatataacgaatggttcgaagaaaagcaaaagaaatagcagcaggaagccaacctataaacaaaatcaaagcctttgtgtcatcatagtaaatag |
50393442 |
T |
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| Q |
228 |
cagaataaagttgtgtgat |
246 |
Q |
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|||| ||||| |||||||| |
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| T |
50393441 |
cagagtaaagctgtgtgat |
50393423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 176 - 251
Target Start/End: Complemental strand, 50390219 - 50390144
Alignment:
| Q |
176 |
ggaagccaagcaataagcaaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgataatag |
251 |
Q |
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| T |
50390219 |
ggaagccaacctataagcaaaatcaaagcctttgagtcattataataaatagcagagtaaagttgtgtgatgatag |
50390144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 246
Target Start/End: Complemental strand, 24223995 - 24223942
Alignment:
| Q |
193 |
caaaatcaaagcttttgggtcatcaaaataaatagcagaataaagttgtgtgat |
246 |
Q |
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|||||||||||| |||| ||||||| ||||||||||||| |||||||||||||| |
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| T |
24223995 |
caaaatcaaagcctttgtgtcatcataataaatagcagagtaaagttgtgtgat |
24223942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 150 - 198
Target Start/End: Complemental strand, 41334209 - 41334161
Alignment:
| Q |
150 |
gaagaaaaagaaaggaaattgcagctggaagccaagcaataagcaaaat |
198 |
Q |
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| T |
41334209 |
gaagaaaaagaaaagaaacagcagcaggaagccaagcaataagtaaaat |
41334161 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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