View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_56 (Length: 250)
Name: NF12882_low_56
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_56 |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 5e-71; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 98 - 237
Target Start/End: Original strand, 13505871 - 13506010
Alignment:
| Q |
98 |
tattcctcctaaactttttgaaagttttgaaattggctattgattaatacataaaaatagagtgatatatgtaatatgcaagtgttggatgtcaaaatat |
197 |
Q |
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| T |
13505871 |
tattcctcctaaactttttgaaagttttgaaattggctattgattaatacataaaaatagagtgatatatgtaatatgaaagtgttggatgtcaaaatat |
13505970 |
T |
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| Q |
198 |
gtgggacgatgctttcttttcaatatgcaaggtactttct |
237 |
Q |
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| T |
13505971 |
gtgggacgatgctttcttttcaatatgcaaggtactttct |
13506010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 13505750 - 13505871
Alignment:
| Q |
1 |
tgaaacgatgctgacattttgatatgaagtttattgatgacatttaccttgttatcaatgttggagatagaagaaatattttgctcatccttctgtatat |
100 |
Q |
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| T |
13505750 |
tgaaacgatgctgacattctgatatgaagtttattgatgacatttaccttgttatcaatgttggagatagaagaaatattttgctcatccttctgtatat |
13505849 |
T |
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| Q |
101 |
tcctcctaaactttttgaaagt |
122 |
Q |
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| T |
13505850 |
tcctcctaaactttttgaaagt |
13505871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 2907438 - 2907482
Alignment:
| Q |
1 |
tgaaacgatgctgacattttgatatgaagtttattgatgacattt |
45 |
Q |
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| T |
2907438 |
tgaaacgatgttgacattctgatatgaagtttattgatgacattt |
2907482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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