View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_59 (Length: 246)
Name: NF12882_low_59
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_59 |
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Alignment Details
Target: chr5 (Bit Score: 135; Significance: 2e-70; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 18 - 164
Target Start/End: Original strand, 1849690 - 1849836
Alignment:
| Q |
18 |
gttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctcta |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1849690 |
gttgccagaacatttactttgcttgatccatttaccttgacccgctgtttcttaaaggctgatcgttactgggatgcacccttcacgccttcattctcta |
1849789 |
T |
|
| Q |
118 |
ggcatcagttagtggaatatgttgttctcggtatcgagaaattagat |
164 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1849790 |
ggcatcagttagtggaatatgttgttctcggtatcgagaaattagat |
1849836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 18 - 164
Target Start/End: Complemental strand, 1164076 - 1163930
Alignment:
| Q |
18 |
gttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctcta |
117 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| |
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| T |
1164076 |
gttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctcta |
1163977 |
T |
|
| Q |
118 |
ggcatcagttagtggaatatgttgttctcggtatcgagaaattagat |
164 |
Q |
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||| ||||||||||||||||| |||||||||||| |||||||||||| |
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| T |
1163976 |
ggcctcagttagtggaatatgctgttctcggtattgagaaattagat |
1163930 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 3299219 - 3299352
Alignment:
| Q |
18 |
gttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctcta |
117 |
Q |
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||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| |
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| T |
3299219 |
gttgccaaaatatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctcta |
3299318 |
T |
|
| Q |
118 |
ggcatcagttagtggaatatgttgttctcggtat |
151 |
Q |
| |
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||| |||||||||||||||||||||||||||||| |
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| T |
3299319 |
ggcctcagttagtggaatatgttgttctcggtat |
3299352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 18 - 151
Target Start/End: Original strand, 3392112 - 3392245
Alignment:
| Q |
18 |
gttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctcta |
117 |
Q |
| |
|
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| |||||||||||||| |
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| T |
3392112 |
gttgccaaaatatttactttgcttgatccatttaccttgacccactgtttcttaaaggctggtcaatactgggatgcacccttcacgccttcattctcta |
3392211 |
T |
|
| Q |
118 |
ggcatcagttagtggaatatgttgttctcggtat |
151 |
Q |
| |
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||| |||||||||||||||||||||||||||||| |
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| T |
3392212 |
ggcctcagttagtggaatatgttgttctcggtat |
3392245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 38987421 - 38987550
Alignment:
| Q |
18 |
gttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctcta |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||| | ||||| ||| | ||||||| || |
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| T |
38987421 |
gttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaata |
38987520 |
T |
|
| Q |
118 |
ggcatcagttagtggaatatgttgttctcg |
147 |
Q |
| |
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|| ||||||||| |||||||||||||||| |
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|
| T |
38987521 |
ggactcagttagtcgaatatgttgttctcg |
38987550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 39726134 - 39726263
Alignment:
| Q |
18 |
gttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctcta |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||| | ||||| ||| | ||||||| || |
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| T |
39726134 |
gttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaata |
39726233 |
T |
|
| Q |
118 |
ggcatcagttagtggaatatgttgttctcg |
147 |
Q |
| |
|
|| ||||||||| |||||||||||||||| |
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|
| T |
39726234 |
ggactcagttagtcgaatatgttgttctcg |
39726263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 39879536 - 39879665
Alignment:
| Q |
18 |
gttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctcta |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||| | ||||| ||| | ||||||| || |
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| T |
39879536 |
gttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaata |
39879635 |
T |
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| Q |
118 |
ggcatcagttagtggaatatgttgttctcg |
147 |
Q |
| |
|
|| ||||||||| |||||||||||||||| |
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|
| T |
39879636 |
ggactcagttagtcgaatatgttgttctcg |
39879665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 147
Target Start/End: Original strand, 40418011 - 40418140
Alignment:
| Q |
18 |
gttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctcta |
117 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||| ||| |||||| | ||||| ||| | ||||||| || |
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| T |
40418011 |
gttgccaaaacatttactttgcttgatccatttaccttgacccactgtttcttagatgctcatcagtactggaaagcaccattcacacattcattcaata |
40418110 |
T |
|
| Q |
118 |
ggcatcagttagtggaatatgttgttctcg |
147 |
Q |
| |
|
|| ||||||||| |||||||||||||||| |
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|
| T |
40418111 |
ggactcagttagtcgaatatgttgttctcg |
40418140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 18 - 145
Target Start/End: Original strand, 39168622 - 39168749
Alignment:
| Q |
18 |
gttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctcta |
117 |
Q |
| |
|
||||||| || | ||||||| |||||||||||||||||||| | || ||||||||||||| |||||| ||||||||||| || ||||||| ||| |
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|
| T |
39168622 |
gttgccaaaaaaattactttacttgatccatttaccttgactgctttttccttaaaggctgatgagtactggaatgcacccttcacgcattcattcacta |
39168721 |
T |
|
| Q |
118 |
ggcatcagttagtggaatatgttgttct |
145 |
Q |
| |
|
|| |||||||||| ||||||||||||| |
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|
| T |
39168722 |
ggactcagttagtgaaatatgttgttct |
39168749 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 32 - 146
Target Start/End: Original strand, 39399637 - 39399751
Alignment:
| Q |
32 |
tactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctctaggcatcagttagtg |
131 |
Q |
| |
|
|||||||||||||||||||||||||||| | || |||||||||||||| |||||| ||||||| ||| || ||||||| |||| ||||||||| |
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| T |
39399637 |
tactttgcttgatccatttaccttgaccgctttttccttaaaggctgatcactactggaatgcacctttcacgcattcattcaataggactcagttagtc |
39399736 |
T |
|
| Q |
132 |
gaatatgttgttctc |
146 |
Q |
| |
|
||||| |||||||| |
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|
| T |
39399737 |
aaatattttgttctc |
39399751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 18 - 145
Target Start/End: Complemental strand, 25912657 - 25912530
Alignment:
| Q |
18 |
gttgccagaacatttactttgcttgatccatttaccttgacccactgtttcttaaaggctgatcgttactgggatgcacccttcctgccttcattctcta |
117 |
Q |
| |
|
||||||| |||||||||||| |||||||||||||||||||| || |||||||| |||||||||| |||||| ||||||||||| ||||| |||| ||| |
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| T |
25912657 |
gttgccaaaacatttactttacttgatccatttaccttgactcattgtttcttgaaggctgatcagtactggaatgcacccttcacgccttaattcacta |
25912558 |
T |
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| Q |
118 |
ggcatcagttagtggaatatgttgttct |
145 |
Q |
| |
|
||| ||||||||| |||||| ||||||| |
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|
| T |
25912557 |
ggcctcagttagttgaatatattgttct |
25912530 |
T |
|
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