View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_6 (Length: 687)
Name: NF12882_low_6
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 617; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 617; E-Value: 0
Query Start/End: Original strand, 17 - 675
Target Start/End: Complemental strand, 2557611 - 2556951
Alignment:
| Q |
17 |
acacttcagatcaaattctatttggttctgtaattaattttttagctttggagattaaaagattgnnnnnnngtgaacttttgtgattactagattcatt |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
2557611 |
acacttcagatcaaattctatttggttctgtaattaattttttagctttggagattaaaagattgtttttttgtgaacttttgtgattactagattcatt |
2557512 |
T |
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| Q |
117 |
tagtggacacaagttatagtttggtttttacttaggatagctgtaattgtttgtagtgattaaacttttggaaaattacttggaattactctacttgtgt |
216 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2557511 |
tagcggacacaagttatagtttggtttttacttaggatagctgtaattgtttgtagtgattaaacttttggaaaattacttggaattactctacttgtgt |
2557412 |
T |
|
| Q |
217 |
ttgaataattggaatttagggcatatgcttagctttacattgatctgtgaagcattgaca--gacactggacacctggtaataatttgagaaaatataag |
314 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
2557411 |
ttgaataattggaatttagggcatatgcttagctttacattgatctgtgaagcattgacatagacactggacacctggtaataatttgagaaaatataag |
2557312 |
T |
|
| Q |
315 |
taatcaaatctaagcacatgtgtcggtgtcggacactgatatgtgtgggacactggatactccttcattatgaaacagaggtggaccctcgtagagctga |
414 |
Q |
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| T |
2557311 |
taatcaaatctaagcacatgtgtcggtgtcggacactgatatgtgtgggacactggatactccttcattatgaaacagaggtggaccctcgtagagctga |
2557212 |
T |
|
| Q |
415 |
gtatgtacccctgcactgtacaccctgagattttaaaactaaagaatagttttctgaaccccctgacctaaaacttttgtagcaaatgcccaaaataaac |
514 |
Q |
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| T |
2557211 |
gtatgtacccctgcactgtacaccctgagattttaaaactaaagaatagttttctgaaccccctgacctaaaaattttgtagcaaatgcccaaaataaac |
2557112 |
T |
|
| Q |
515 |
attctcatttatcactgttcccatgtgacagcaacagccaaaatgagtgacttcacatcttctctcctgggatttgtgaaaccaaaaataaccctgcact |
614 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2557111 |
attctcatttatcactgttcccatgtgacagcaacagccaaaatgagtgacttcacatcttctctcctgggatttgtgaaaccaaaaataaccctgcact |
2557012 |
T |
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| Q |
615 |
gccacagttcccttcttggaccctagctgcaccagtacactcaattgcggttccctatgct |
675 |
Q |
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| T |
2557011 |
gccacagttcccttcttggaccctagctgcaccagtacactaaattgcggttccctatgct |
2556951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 350
Target Start/End: Complemental strand, 33331995 - 33331938
Alignment:
| Q |
293 |
taataatttgagaaaatataagtaatcaaatctaagcacatgtgtcggtgtcggacac |
350 |
Q |
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| T |
33331995 |
taataatttgagaaaataaaagtgattaaatgtaattacatgtgtcggtgtcagacac |
33331938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 189 - 249
Target Start/End: Original strand, 39538316 - 39538376
Alignment:
| Q |
189 |
aaattacttggaattactctacttgtgtttgaataattggaatttagggcatatgcttagc |
249 |
Q |
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|||| ||||||||| || |||||||||||||||| ||||| |||| |||| ||||||||| |
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| T |
39538316 |
aaatcacttggaatgaccctacttgtgtttgaattattggtatttgaggcaaatgcttagc |
39538376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 349
Target Start/End: Complemental strand, 32931542 - 32931486
Alignment:
| Q |
293 |
taataatttgagaaaatataagtaatcaaatctaagcacatgtgtcggtgtcggaca |
349 |
Q |
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| T |
32931542 |
taataatttaagaaaatagaagtgattaaatataactacatgtgtcggtgtcggaca |
32931486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 293 - 353
Target Start/End: Complemental strand, 26208057 - 26207997
Alignment:
| Q |
293 |
taataatttgagaaaatataagtaatcaaatctaagcacatgtgtcggtgtcggacactga |
353 |
Q |
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|||||||||||||||||| |||| | ||| ||| |||||||||| |||||||||||||| |
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| T |
26208057 |
taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgtcagtgtcggacactga |
26207997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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