View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12882_low_65 (Length: 224)
Name: NF12882_low_65
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12882_low_65 |
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Alignment Details
Target: chr3 (Bit Score: 175; Significance: 2e-94; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 53513722 - 53513536
Alignment:
| Q |
1 |
cgacgctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactattaaaaactgtaaatggttcaacccta |
100 |
Q |
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| T |
53513722 |
cgacgctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaattattaaaaactgtaaatggttcaacccta |
53513623 |
T |
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| Q |
101 |
aaatatgcatatatgctctattaaaaacaatcaattgattaatcagttggatccaaatatatattttcttaatgttgaatgttagtc |
187 |
Q |
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| T |
53513622 |
aaatatgcatatatactctattaaaaacaatcaatagattaatcagttggatccaaatatatattttcttaatgttgaatgttagtc |
53513536 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 195
Target Start/End: Complemental strand, 53510109 - 53509923
Alignment:
| Q |
5 |
gctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactattaaaaactgtaaatggttcaaccctaaaat |
104 |
Q |
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| T |
53510109 |
gctctgctgtttcggagcatgaagccagatggcacacttgatacttctagtttacacggttagaatctattaaaaaccgcaactcgttcaactgtaaaat |
53510010 |
T |
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| Q |
105 |
atgcatatatgctctattaaaaacaatcaattgattaatcagttggatccaaatatatattttcttaatgttgaatgttagtcgttagttt |
195 |
Q |
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| T |
53510009 |
atgtatacattctctattaaacacaatctatagattaatgagttggatc----taaatattttttcaatgttgaattttagtagttagttt |
53509923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 5 - 94
Target Start/End: Complemental strand, 53547629 - 53547540
Alignment:
| Q |
5 |
gctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaactattaaaaactgtaaatggttca |
94 |
Q |
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| T |
53547629 |
gctctgctgttttggagcatgaggccagatgccacactagatgcatccagtttacacggttagggactattaaatactttaactggttca |
53547540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 53524015 - 53523948
Alignment:
| Q |
5 |
gctctgctgttttggagcatgaagccagatggcacactagatacttctagtttacacggttagaaact |
72 |
Q |
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| T |
53524015 |
gctctgctgttttggagcgttaagccagatggctcactagatacagctagcttacatggttagaaact |
53523948 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 171 - 213
Target Start/End: Complemental strand, 53513519 - 53513477
Alignment:
| Q |
171 |
aatgttgaatgttagtcgttagtttgttacattaatagtctgt |
213 |
Q |
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| T |
53513519 |
aatgttgaatgttagtcgttagtttgttgcattaataatctgt |
53513477 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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