View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12882_low_8 (Length: 663)

Name: NF12882_low_8
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12882_low_8
NF12882_low_8
[»] chr2 (1 HSPs)
chr2 (20-648)||(18244033-18244658)


Alignment Details
Target: chr2 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 20 - 648
Target Start/End: Original strand, 18244033 - 18244658
Alignment:
Q  20 gctatatgacataatagtacaggctcatcctcttgtcatgaaacaaaagtcacaaggaaccttttcatgagtattagtcataatcatcattatatacata 119  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18244033 gctatatgacataatagtacaggctcatcctcttgtcatggaacaaaagtcacaaggaaccttttcatgagtattagtcataatcatcattatatacata 18244132  T
Q  120 catttgttgttatcattttgtaattattgaatggtaaatcactcgaaagatatttctaattgatagtcatagcctaaatttagggaagcctagagacctn 219  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  18244133 catttgttgttatcattttgtaattattgaatggtaaatcactcgaaagatatttctaattgatagtcatagcctaaatttagggaagcctagagaccta 18244232  T
Q  220 nnnnnnngttcatttcacaataacatggtcaagaacataaccgtttgctaactttgccaatgtgaatttagaagnnnnnnnnntcgtgttaaccctccag 319  Q
           |||||||||||||||||||| ||||||||| ||| ||||||||||||||||||||||| ||||||||         ||||||||||||||||     
T  18244233 aaaaaaagttcatttcacaataacatgctcaagaacacaacggtttgctaactttgccaatgtgagtttagaagaaaaaaaa-tcgtgttaaccctccaa 18244331  T
Q  320 tttttaaggaaaatagactctgataatccaagttcaactgagtggtaaataaaatctgattaaaaattgttttatcaataaaccaaactcaagtagttat 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  18244332 tttttaaggaaaatagactctgataatccaagttcaactgagtggtaaataaaatctgattaaaaattgttttatcaataaaccaaattcaagtagttat 18244431  T
Q  420 gaccaatttgttttctttggtgaagctacaaattagaactgctaaaattgtaaaaagtgcttacaatatggttttacttttacctagttgagtaaaaata 519  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18244432 gaccaatttgtt--ctttggtgaagctacaaattagaactgctaaaattgtaaaaagtgcttacaatatggttttacttttacctagttgagtaaaaata 18244529  T
Q  520 aggttccctataagatagggaatttgagataaccacaaatgtatgtatggccatatatattgtcagtaagtcttgcagaaaggggtcattctattctcgc 619  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  18244530 aggttccctataagatagggaatttgagataaccacaaatgtatgtatggccatatatattgtcagtaagtcttgcagaaaggggtcattctattctagc 18244629  T
Q  620 tgtcagacgtcttcttatgccgtcctttg 648  Q
    |||||||||||||||||||||||||||||    
T  18244630 tgtcagacgtcttcttatgccgtcctttg 18244658  T

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