View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12882_low_9 (Length: 660)

Name: NF12882_low_9
Description: NF12882
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12882_low_9
NF12882_low_9
[»] chr3 (1 HSPs)
chr3 (19-647)||(44473530-44474159)


Alignment Details
Target: chr3 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 19 - 647
Target Start/End: Complemental strand, 44474159 - 44473530
Alignment:
Q  19 gattgatccctttctcgcttcatcaatgatgtatgcagtattttggttgctttgggaaatgtaaaataacccgagggagtactatttatcaagtataata 118  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  44474159 gattgatccctttctcgcttcatcaatgatgtatgtagtattttggttgctttgagaaatgtaaaataacccgagggagtactatttatcaagtataata 44474060  T
Q  119 aaattttgttattattctaagtcgttgtgtaattttatgagaattgatcggttgannnnnnnnnnnnnnn-gggtggttccttggaatgtctatggtttc 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||                ||| |||||||||||||||||||||||||    
T  44474059 aaattttgttattattctaagtcgttgtgtaattttatgagaattgatcggttgattttttttttttttttggggggttccttggaatgtctatggtttc 44473960  T
Q  218 gaggttgcttgtttattttagtaacagttttctttatgccactggatggctacaatgtggcagtctttgaaattggtgatgagtccggtgacttttgaag 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473959 gaggttgcttgtttattttagtaacagttttctttatgccactggatggctacaatgtggcagtctttgaaattggtgatgagtccggtgacttttgaag 44473860  T
Q  318 agtctccgtaatgttcgagtaggggcttacaaattgtactcctttcacagacaatggatgtgtttatgctactggtctcaatgattttggacagctcggt 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473859 agtctccgtaatgttcgagtaggggcttacaaattgtactcctttcacagacaatggatgtgtttatgctactggtctcaatgattttggacagctcggt 44473760  T
Q  418 acatcggagagtaaaccctactcagttgtatgattactttgccttttttcctgtatttttgtcaagtaaactgatgacaattgcaacatcttgttctttt 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473759 acatcggagagtaaaccctactcagttgtatgattactttgccttttttcctgtatttttgtcaagtaaactgatgacaattgcaacatcttgttctttt 44473660  T
Q  518 gctctaatgttcatgagtgcattacttgccagcattttcttgtttgcgatattttattcacttgtctgtaatgtttcaggtgccacttcaagtttttggg 617  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44473659 gctctaatgttcatgagtgcattacttgccagcattttcttgtttgcgatattttattcacttgtctgtaatgtttcaggtgccacttcaagtttttggg 44473560  T
Q  618 cacgagaagaaagttgtacggatctctgct 647  Q
    ||||||||||||||||||||||||||||||    
T  44473559 cacgagaagaaagttgtacggatctctgct 44473530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University