View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12883_high_5 (Length: 381)
Name: NF12883_high_5
Description: NF12883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12883_high_5 |
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| [»] scaffold0026 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 22 - 372
Target Start/End: Complemental strand, 26191183 - 26190826
Alignment:
| Q |
22 |
ggggattcatgtgtattttcaagtgaaaatgaattgaccaggataatggaatacatgttgtagaaactagaaagcttttaatgcaatcattagggattta |
121 |
Q |
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| T |
26191183 |
ggggattcatgtgtattttcaagtgaaaatgaattgaccaggataatggaatacatgttgtagaaactagaaagcttttaatgcaatcattagggattta |
26191084 |
T |
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| Q |
122 |
gatcttccaaatgtgaagtgtgggtgcactttatatcagtctcgagttgcaagatcggcggagtggtttctta-------taactatataggtacttgta |
214 |
Q |
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| T |
26191083 |
gatcttccaaatgtgaagtgtgggtgcactttatatcagtctcgagttgtaagatcggcggagtggtttcttatatcaattaactatataggtacttgta |
26190984 |
T |
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| Q |
215 |
agattaaaaatattaaccaatgatttttggtgaagacattaatgaaaatgctattgttctgtttctttcagtcgatcagttctttaagattatttcttac |
314 |
Q |
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| T |
26190983 |
agattaaaaatattaaccattgatttttggtgaagacattaatgaaaatgctattgttctgtttctttcagtcgatcagttctttaagattatttcttac |
26190884 |
T |
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| Q |
315 |
aatgttgtcataaaacaaaaatttgtgaaattaatagatatatgtcactgacctatgc |
372 |
Q |
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| T |
26190883 |
aatgttgtcgtaaaacaaaaatttgtgaaattaatagatatatgtcactgacctatgc |
26190826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 8e-43; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 8e-43
Query Start/End: Original strand, 259 - 371
Target Start/End: Original strand, 16298793 - 16298905
Alignment:
| Q |
259 |
aaaatgctattgttctgtttctttcagtcgatcagttctttaagattatttcttacaatgttgtcataaaacaaaaatttgtgaaattaatagatatatg |
358 |
Q |
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| T |
16298793 |
aaaatgctattgttctgtttctttcagtcaataagttctttaagattatttcttacaatgttgtcattaaacaaaaatttgtgaaattaatagatacatg |
16298892 |
T |
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| Q |
359 |
tcactgacctatg |
371 |
Q |
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| T |
16298893 |
tcaccgacttatg |
16298905 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 109 - 177
Target Start/End: Original strand, 93737 - 93805
Alignment:
| Q |
109 |
cattagggatttagatcttccaaatgtgaagtgtgggtgcactttatatcagtctcgagttgcaagatc |
177 |
Q |
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| T |
93737 |
catttgggatttagatctttcaaatgtgaagtgtaggtgcactttatttcagtcttgagtagtaagatc |
93805 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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