View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12883_low_1 (Length: 608)
Name: NF12883_low_1
Description: NF12883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12883_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 383; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 18 - 471
Target Start/End: Original strand, 52875617 - 52876071
Alignment:
| Q |
18 |
agctctcttaaacgatacaactagacaa-tggctccaaatacaacaaacaaatcattgtacacaaatatttgtcatctctgattgatgagaaggacaatg |
116 |
Q |
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| T |
52875617 |
agctctcttaaacgatacaactagacaaatggctccaaatacaacaaacaaatcattgtacacaaatatttgtcatctctgattgatgagaatgacaatg |
52875716 |
T |
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| Q |
117 |
gtgagagacattcaagattaatagaaagcgataaagttttggattattctcttcctcaagtttgaacatggcccttagagatcaaccaaactttcaggca |
216 |
Q |
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| T |
52875717 |
gtgagagacattcaagattaatagaaagcgaaaaagttttggattattctcttcctcaagtttgaacatggcccttagagatcaaccaaactttcaggca |
52875816 |
T |
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| Q |
217 |
gacaatcaacccttccaagtttacttatattatacaaatctgattattttttcattctagttgcatgggaattattgttttccatacatagggaatgaga |
316 |
Q |
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| T |
52875817 |
gacaatcaacccttccaagtttacttatattatacaaatctgattattttttcattctagttgcatgggaattattgttttccatacatagggaatgaga |
52875916 |
T |
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| Q |
317 |
aacttcactatgttcttgagtctgtttatagttgtatac--attttttattctttcgagaatatttgtttgcctctgactctatttctccnnnnnnnnnn |
414 |
Q |
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| T |
52875917 |
aacttcactatgttcttgagtctgtttatagttgtatacgtttttttttttctttcgagaatatttgtttgcctctgactctatttctcc--tttttttt |
52876014 |
T |
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| Q |
415 |
gttggatagatttttctttactataaaaaatgtatcatatgaaactagtcaattcaa |
471 |
Q |
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| T |
52876015 |
gttggatagatttttctttactataaaaaatgtatcatatgaaattagtcaattcaa |
52876071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 539 - 608
Target Start/End: Original strand, 52876140 - 52876209
Alignment:
| Q |
539 |
catttcaaggggatgcataattgtatcgtaactctcactttaaggtataacatatgtcttatttcttctc |
608 |
Q |
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| T |
52876140 |
catttcaaggggatgcataattgtattgtaactctcactttaaggtataacatatgtcttatttcttctc |
52876209 |
T |
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