View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12883_low_3 (Length: 396)
Name: NF12883_low_3
Description: NF12883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12883_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 1119829 - 1119461
Alignment:
| Q |
20 |
aacaacagatctgatatatatgctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgatttacatttgctaaagtaatatct |
119 |
Q |
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| T |
1119829 |
aacaacagatctgatatatatgctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgatttacatttgctaaagtaatatct |
1119730 |
T |
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| Q |
120 |
ataaaagaaaaaattattttctaaagtactacccgcactaattcacaatttcctctcaactatttatgcagctattatcgacttgtcgtaatagacccac |
219 |
Q |
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| T |
1119729 |
ataaaagaaaaaattattttctaaagtactacccgcactaattcacaatttcctctcaactatttatgcagctattatcgacttgtcgtaatagacccac |
1119630 |
T |
|
| Q |
220 |
caacaggacacacaaaaacttcatcctttgagagtgtgttgttgaaacgtggcatgtatttatgctaatctgttgagcaatcaatagtgttataatattc |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1119629 |
caacaggacacacaaaaacttcatcctttgagagtgtgttgttgaaacgtggcatgtatttatgctaatctgttgagcaatcaatagtgttataatattc |
1119530 |
T |
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| Q |
320 |
gtcagtctattgaaaaagaagattacctaagtcatattatcttttaaaaacatgcgcaagattcatctc |
388 |
Q |
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| T |
1119529 |
gtcagtctattgaaaaagaagcttacctaagtcatattatcttttaaaaacatgcgcaagattcatctc |
1119461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 20 - 221
Target Start/End: Complemental strand, 1113144 - 1112943
Alignment:
| Q |
20 |
aacaacagatctgatatatatgctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgatttacatttgctaaagtaatatct |
119 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
1113144 |
aacaacagatctg----atatgctcaagtatttatgcgcaacatgtatatcttgaactcttaagaacataattcgatttacatttgctaaagtactatct |
1113049 |
T |
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| Q |
120 |
ataaaagaaaaaattattttctaaagta----ctacccgcactaattcacaatttcctctcaactatttatgcagctattatcgacttgtcgtaatagac |
215 |
Q |
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| T |
1113048 |
ataaaagaaaaaattatttgctaaagtactagctacctgcactaattcataatatcctatcatctatttatgcagctattatcaacttgtcgtaatagac |
1112949 |
T |
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| Q |
216 |
ccacca |
221 |
Q |
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|||||| |
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| T |
1112948 |
ccacca |
1112943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 233 - 388
Target Start/End: Complemental strand, 1112394 - 1112239
Alignment:
| Q |
233 |
aaaaacttcatcctttgagagtgtgttgttgaaacgtggcatgtatttatgctaatctgtt---gagcaatcaatagtgttataatattcgtcagtctat |
329 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| || || |||||||||||||||||||| ||| ||||||||| |
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| T |
1112394 |
aaaaacttcatcctttgagagtgtgttgttgaaacgtggcatatatttatgctaacctcttcttgagcaatcaatagtgttata---ttcatcagtctat |
1112298 |
T |
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| Q |
330 |
tgaaaaagaagattacctaagtcatattatcttttaaaaacatgcgcaagattcatctc |
388 |
Q |
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||||||||||| | ||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
1112297 |
tgaaaaagaagctcacctaagtcattttatcttttaaaaacatgctcaagattcatctc |
1112239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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