View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12883_low_4 (Length: 394)
Name: NF12883_low_4
Description: NF12883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12883_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 5 - 375
Target Start/End: Original strand, 38485676 - 38486046
Alignment:
| Q |
5 |
gagcagcacagaactgggaatgaagatgggatatcaactctatactatctgcagactatatatgaagatgaatggaagaattttatggagagaatgaggc |
104 |
Q |
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| T |
38485676 |
gagcagctcagaactgggaatgaagatgggatatcaactctatactatctgcagactatatatgaagatgaatggaagaattttatggagagaatgaggc |
38485775 |
T |
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| Q |
105 |
gagaggggatgatgaaagaccgtgagatatggacagataaactaagagaattgaggtcatgggcatcctatagaggccagacactatcgcggactgttag |
204 |
Q |
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| T |
38485776 |
gagaggggatgatgaaagaccgtgagatatggacagataaactaagagaattgaggtcatgggcatcctatagaggccagacactatcgcggactgttag |
38485875 |
T |
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| Q |
205 |
aggaatgatgtactactataaggccctcaagcttttggcttttctagattctgcatcagaagtagagatcacagaaggctcacgtgaacttgttccaacg |
304 |
Q |
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| T |
38485876 |
aggaatgatgtactactataaggccctcaagcttttggcttttctagattctgcatcagaagtagagatcacagaaggctcacgtgaacttgttccaacg |
38485975 |
T |
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| Q |
305 |
aatcaagatattccagacggtatcaactcgcaaaagtcatcattttctgaagcaagcagtacagtaagttt |
375 |
Q |
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| T |
38485976 |
aatcaagatattccagacggtatcaactcgcaaaagtcatcattttctgaagcaagcagtacagtaagttt |
38486046 |
T |
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Target: chr4 (Bit Score: 99; Significance: 9e-49; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 9e-49
Query Start/End: Original strand, 8 - 298
Target Start/End: Original strand, 30120069 - 30120359
Alignment:
| Q |
8 |
cagcacagaactgggaatgaagatgggatatcaactctatactatctgcagactatatatgaagatgaatggaagaattttatggagagaatgaggcgag |
107 |
Q |
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| T |
30120069 |
cagctcaggactgagaatgaagacggggtttcaaccctgtactatttgcagactatttatgatgatgagtggaagaattttctggagaggatgcgtcggg |
30120168 |
T |
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| Q |
108 |
aggggatgatgaaagaccgtgagatatggacagataaactaagagaattgaggtcatgggcatcctatagaggccagacactatcgcggactgttagagg |
207 |
Q |
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| T |
30120169 |
aggggatgatgaaagacagtgatctgtggactgataaacttagagatttgaggctgtgggcttcctaccgaggccaaacactatcgcggacagttagagg |
30120268 |
T |
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| Q |
208 |
aatgatgtactactataaggccctcaagcttttggcttttctagattctgcatcagaagtagagatcacagaaggctcacgtgaacttgtt |
298 |
Q |
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| T |
30120269 |
aatgatgtattactatcgggccctcaagatgttgacatttctggattctgcatcagaaatggacattcgagaaggctcacgcgagcttgtt |
30120359 |
T |
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