View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12883_low_6 (Length: 354)
Name: NF12883_low_6
Description: NF12883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12883_low_6 |
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| [»] scaffold0002 (2 HSPs) |
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| [»] scaffold1779 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 130 - 336
Target Start/End: Complemental strand, 18342054 - 18341848
Alignment:
| Q |
130 |
caggagcacgtttattatatcgaaagtaaggagcaataatctatcgtgggtaaagatactatcgctgatatgctaactttgatacgcaatgctgacatga |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18342054 |
caggagcacgtttattatatcgaaagtaaggagcaataatctatcgtgggtaaagatactatcgctgatatgctaactttgatacgcaatgctgacatga |
18341955 |
T |
|
| Q |
230 |
atcgaaaaagaacggctcaaattccacttactaatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatgg |
329 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18341954 |
atcgaaaaagaacggttcaaataccacttactaatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatgg |
18341855 |
T |
|
| Q |
330 |
agaaagc |
336 |
Q |
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||||||| |
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| T |
18341854 |
agaaagc |
18341848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 131 - 262
Target Start/End: Complemental strand, 22101330 - 22101198
Alignment:
| Q |
131 |
aggagcacgtttattatatcgaaagtaaggagcaataatctatcgtgggtaaagatactatcgctgatatgctaactttgatacgc-aatgctgacatga |
229 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||| ||||||||||||| |
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| T |
22101330 |
aggagcacgtttattataccgaaagtaaggagcaataatctatcgtgggtaaagatactatcgtcgatatgataactttgatacgcaaatgctgacatga |
22101231 |
T |
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| Q |
230 |
atcgaaaaagaacggctcaaattccacttacta |
262 |
Q |
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| T |
22101230 |
atcgaaaaagaacggttcaaataccacttacta |
22101198 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 261 - 334
Target Start/End: Complemental strand, 22100912 - 22100839
Alignment:
| Q |
261 |
taatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatggagaaa |
334 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
22100912 |
taatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatcgagaaa |
22100839 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 130 - 336
Target Start/End: Original strand, 138303 - 138508
Alignment:
| Q |
130 |
caggagcacgtttattatatcgaaagtaaggagcaataatctatcgtgggtaaagatactatcgctgatatgctaactttgatacgcaatgctgacatga |
229 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
138303 |
caggagcacgtttattatatcgaaagtaaggagcaataatctatcgtgggtaaagatactatcgctgatatgctaactttgatacgcaatgctgacatga |
138402 |
T |
|
| Q |
230 |
atcgaaaaagaacggctcaaattccacttactaatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatgg |
329 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
138403 |
atcgaaaaagaacggttcaaataccacttactaatatcaccgaaaacattgt-aaaatacttttacgagagggttttgttgaaaacgttagaaaacatgg |
138501 |
T |
|
| Q |
330 |
agaaagc |
336 |
Q |
| |
|
||||||| |
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| T |
138502 |
agaaagc |
138508 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 262 - 313
Target Start/End: Complemental strand, 277183 - 277132
Alignment:
| Q |
262 |
aatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaa |
313 |
Q |
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||||| |||||||||||||| ||||||||| |||||||||||||| |||||| |
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| T |
277183 |
aatattaccgaaaacattgttaaaatacttctacgagagggttttcttgaaa |
277132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 191; Significance: 1e-103; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 130 - 336
Target Start/End: Complemental strand, 13168685 - 13168480
Alignment:
| Q |
130 |
caggagcacgtttattatatcgaaagtaaggagcaataatctatcgtgggtaaagatactatcgctgatatgctaactttgatacgcaatgctgacatga |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13168685 |
caggagcacgtttattatatcgaaagtaaggagcaataatctatcgtgggtaaagatactatcgctgatatgctaactttgatacgcaatgctgacatga |
13168586 |
T |
|
| Q |
230 |
atcgaaaaagaacggctcaaattccacttactaatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttgaaaacgttagaaaacatgg |
329 |
Q |
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||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13168585 |
atcgaaaaagaacggttcaaataccacttactaatatcaccgaaaacattgt-aaaatacttttacgagagggttttgttgaaaacgttagaaaacatgg |
13168487 |
T |
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| Q |
330 |
agaaagc |
336 |
Q |
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||||||| |
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| T |
13168486 |
agaaagc |
13168480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 211 - 327
Target Start/End: Original strand, 1220 - 1336
Alignment:
| Q |
211 |
atacgcaatgctgacatgaatcgaaaaagaacggctcaaattccacttactaatatcaccgaaaacattgtgaaaatacttttacgagagggttttgttg |
310 |
Q |
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||||| |||||||| |||||| ||||| ||||| |||||| | |||||| ||||| ||||||||||| ||||||||||||||||| |||||| | | |
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| T |
1220 |
atacgaaatgctgatatgaatagaaaaggaacgattcaaataggatctactaacatcactgaaaacattgttaaaatacttttacgagaaggttttatcg |
1319 |
T |
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| Q |
311 |
aaaacgttagaaaacat |
327 |
Q |
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|
| T |
1320 |
ataacgtaaggaaacat |
1336 |
T |
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