View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12883_low_9 (Length: 255)
Name: NF12883_low_9
Description: NF12883
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12883_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 17 - 240
Target Start/End: Complemental strand, 30678726 - 30678503
Alignment:
| Q |
17 |
aagagaaatattaacgtattaagtttatgagaggtgatattcctcacgacaaaaaacaacctgtgcttttcacaaaacagttgaactgttggattttgat |
116 |
Q |
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| T |
30678726 |
aagagaaatattaacgtatcaagtttatgagaggtgctattcctcacgacaaaaaacaacctgtgcttttcacaaaacagttgaactgttggattttgat |
30678627 |
T |
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| Q |
117 |
ctgtctggtagcgacagatgaaggcaacaataacagctttgtcctccgatgtgatggtgactagtcttcgcagtggaacgaaggttacctatagacaagt |
216 |
Q |
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| T |
30678626 |
ctgtctggtagcgacagatgaaggcaacaataacagctttgtcctccgatgtgatggtgactagtttttgcagtggaacgaaggttgcctatagacaagt |
30678527 |
T |
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| Q |
217 |
tagcactccagcgctcaagtcagt |
240 |
Q |
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|||||||||||||||||||||||| |
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| T |
30678526 |
tagcactccagcgctcaagtcagt |
30678503 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 15514678 - 15514618
Alignment:
| Q |
180 |
gtcttcgcagtggaacgaaggttacctatagacaagttagcactccagcgctcaagtcagt |
240 |
Q |
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| T |
15514678 |
gtcttcgcggtggaacgaagggtgcctgtaggcacgttagcactccaacgctcaagtcagt |
15514618 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 179 - 241
Target Start/End: Original strand, 4380259 - 4380321
Alignment:
| Q |
179 |
agtcttcgcagtggaacgaaggttacctatagacaagttagcactccagcgctcaagtcagtg |
241 |
Q |
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| T |
4380259 |
agtcttcgcagtggaacggaaggtacctgtaggcacgctagcactccagcgctcaagttagtg |
4380321 |
T |
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