View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12884_high_14 (Length: 259)
Name: NF12884_high_14
Description: NF12884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12884_high_14 |
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Alignment Details
Target: chr8 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 7293666 - 7293908
Alignment:
| Q |
1 |
ttttgtccacaagaacaacccagatctgcaattgcaaggcttctgggaagtgtgctggagtagaggctagttatggcttcctctcttatatgttttgtta |
100 |
Q |
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| T |
7293666 |
ttttgtccacaagaacaacccagatctgcaattgcaaggcttctgggaagtgtgctggagtagaggctagttatggcttcctctcttatatgttttgtta |
7293765 |
T |
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| Q |
101 |
tagaaattccctttccctataatgacataaaaagaaaatgtttagcacggcgcgagacattacaaattaccaattattttcaatgcaatcattgata--- |
197 |
Q |
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| T |
7293766 |
aagaaattccctttccctataatgacataaaaagaaaatgtttagcacggcgcgagacattacaaattaccaattattttcaatgcaatcattgatatgt |
7293865 |
T |
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| Q |
198 |
tgttggattgaaaagctaaactctaagtgtgagatgaataaca |
240 |
Q |
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| T |
7293866 |
tgttggattgaaaagctaaactctaagtgtgagatgaataaca |
7293908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 7298144 - 7298228
Alignment:
| Q |
5 |
gtccacaagaacaacccagatctgcaattgcaaggcttctgggaagtgtgctggagtagaggctagttatggcttcctctcttat |
89 |
Q |
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| T |
7298144 |
gtccagaagaacaacctaaatctgcaattgcaaggcttttgaaaagtgttttggagtagaggcttgttatggcttcatctcttat |
7298228 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 205 - 240
Target Start/End: Original strand, 40739785 - 40739820
Alignment:
| Q |
205 |
ttgaaaagctaaactctaagtgtgagatgaataaca |
240 |
Q |
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| T |
40739785 |
ttgaaaagctaaacactaagtgtgagatgaataaca |
40739820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 11 - 107
Target Start/End: Original strand, 27736955 - 27737051
Alignment:
| Q |
11 |
aagaacaacccagatctgcaattgcaaggcttctgggaagtgtgctggagtagaggctagttatggcttcctctcttatatgttttgttatagaaat |
107 |
Q |
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| T |
27736955 |
aagagcaacccaagtctgcaattgccaagcttctgggaagtgtgttgcaatataggttggttatagcttcgtctctcaaaggttttgttaaagaaat |
27737051 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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