View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12884_high_16 (Length: 250)

Name: NF12884_high_16
Description: NF12884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12884_high_16
NF12884_high_16
[»] chr8 (3 HSPs)
chr8 (9-250)||(6138945-6139186)
chr8 (9-250)||(6177034-6177275)
chr8 (9-191)||(6185889-6186071)


Alignment Details
Target: chr8 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 6139186 - 6138945
Alignment:
Q  9 gtgagatgaacaaccttatttggttgaatctagaagacttaaatctaacaaatctaccgattgaattgtctcacttgagatcacttactgaacttcgggt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6139186 gtgacatgaacaaccttatttggttgaatctagaagacttaaatctaacaaatctaccgattgaattgtctcacttgagatcacttactgaacttcgggt 6139087  T
Q  109 ttctaagtgcgatgttgttactaaatcaaagttagaagccctttttgacggtctgacattattgagattactacacctgaaagactgttgtaacttgatt 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||    
T  6139086 ttctaagtgcaatgttgttactaaatcaaagttagaagccctttttgacggtctgacattattgagattactacacttgaaagactgttgtaatttgatt 6138987  T
Q  209 gaactccctgcaaacattagttccttagaatccttgcatgaa 250  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  6138986 gaactccctgcaaacattagttccttagaatcattgcatgaa 6138945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 9 - 250
Target Start/End: Complemental strand, 6177275 - 6177034
Alignment:
Q  9 gtgagatgaacaaccttatttggttgaatctagaagacttaaatctaacaaatctaccgattgaattgtctcacttgagatcacttactgaacttcgggt 108  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6177275 gtgacatgaacaaccttatttggttgaatctagaagacttaaatctaacaaatctaccgattgaattgtctcacttgagatcacttactgaacttcgggt 6177176  T
Q  109 ttctaagtgcgatgttgttactaaatcaaagttagaagccctttttgacggtctgacattattgagattactacacctgaaagactgttgtaacttgatt 208  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |||||||| ||||||    
T  6177175 ttctaagtgcaatgttgttactaaatcaaagttagaagccctttttgagggtctgacattattgagattactacacttgaaagattgttgtaatttgatt 6177076  T
Q  209 gaactccctgcaaacattagttccttagaatccttgcatgaa 250  Q
    |||||||||||||||||||||||||||||||| |||||||||    
T  6177075 gaactccctgcaaacattagttccttagaatcattgcatgaa 6177034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 9 - 191
Target Start/End: Complemental strand, 6186071 - 6185889
Alignment:
Q  9 gtgagatgaacaaccttatttggttgaatctagaagacttaaatctaacaaatctaccgattgaattgtctcacttgagatcacttactgaacttcgggt 108  Q
    |||| |||||||||||||  | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  6186071 gtgacatgaacaaccttaggttgttgaatctagaagatttaaatctaacaaatctaccgattgaattgtctcacttgagatcacttactgaactccgggt 6185972  T
Q  109 ttctaagtgcgatgttgttactaaatcaaagttagaagccctttttgacggtctgacattattgagattactacacctgaaag 191  Q
    ||||| ||||  ||| || |||||||||| ||||||| |||||||||| ||||||  || ||| | |||||||||| ||||||    
T  6185971 ttctacgtgcagtgtagtaactaaatcaatgttagaaaccctttttgatggtctgggatcattaacattactacacttgaaag 6185889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University