View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12884_high_5 (Length: 340)
Name: NF12884_high_5
Description: NF12884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12884_high_5 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 250; Significance: 1e-139; HSPs: 12)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 15 - 318
Target Start/End: Complemental strand, 5503082 - 5502780
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5503082 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagaccaaggacaagacatttacatacggctggcatct |
5502983 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattattaa |
214 |
Q |
| |
|
||||| ||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5502982 |
tcagagcttggtattttcatttgctattacatattttgtcctttcagttaga--tatagcataaatttacatatttcaccatttgtgttgatattattat |
5502885 |
T |
|
| Q |
215 |
ggaccagtaaattctcatttcactttcaagtaactatatacctgagctattt-taagaaaaagttgtgttcaacttccaaatggatgttttgttctctat |
313 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
5502884 |
ggaccagtaaattctcatttcactttcaagtaactatttaccagagctatttctaagaaaaagttgtgttcaacttccaaatggaagttttgttctctat |
5502785 |
T |
|
| Q |
314 |
agatg |
318 |
Q |
| |
|
|||| |
|
|
| T |
5502784 |
cgatg |
5502780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 28 - 215
Target Start/End: Complemental strand, 5446520 - 5446333
Alignment:
| Q |
28 |
agtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatcttcagaacttggta |
127 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5446520 |
agtggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggta |
5446421 |
T |
|
| Q |
128 |
ttttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattattaag |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
5446420 |
ttttcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattattaag |
5446333 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 18 - 215
Target Start/End: Complemental strand, 5490266 - 5490070
Alignment:
| Q |
18 |
agatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatcttca |
117 |
Q |
| |
|
||||||||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| ||||||||||| |
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|
| T |
5490266 |
agatggtgggagtggctgcatactttggtttaacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatcttca |
5490167 |
T |
|
| Q |
118 |
gaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattattaag |
215 |
Q |
| |
|
||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
5490166 |
gaacttggtattttcatttcttattacatattttgtcttttcagttagatatatagcataaattta-atatttcaccatttgtgttgatattattaag |
5490070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 5455092 - 5454892
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||| |||||||||| |||||||||||||||| ||||| |||||||||||||||||||||| |||||||| |
|
|
| T |
5455092 |
cagagatgatgggagtggctgcatactttggtttcacaacattgtggacatgagaaaacatcaagaccaaggacaagacatttacatacggatggcatct |
5454993 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattattaa |
214 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||||||| ||| |||||||||||||||||||||||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
5454992 |
tcagaacttggtattttcttttcttattacatattttgtcttttcagttagatatatagcataaacttatatatttcaccatttgtcttgatattattaa |
5454893 |
T |
|
| Q |
215 |
g |
215 |
Q |
| |
|
| |
|
|
| T |
5454892 |
g |
5454892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 5484875 - 5484688
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||| ||| |||||||||| ||||||||||||||||||||| |
|
|
| T |
5484875 |
cagagatggtgggagtggctgcttactttggtttggcaacattgtggacatgagaaaacatcctgacgtaggacaagaaatttacatacggctggcatct |
5484776 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt |
202 |
Q |
| |
|
|||||||||||||||||||||| | |||||||| || |||||| |||||||||||| ||||||| ||||||| ||||||||| |
|
|
| T |
5484775 |
tcagaacttggtattttcatttccaaagacatattttatctcttcagtcagatatatagcacaaatttatttatttcatcatttgtgt |
5484688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 5525919 - 5525734
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| |||||||| |
|
|
| T |
5525919 |
cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgattggcatct |
5525820 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgt |
202 |
Q |
| |
|
||||||||||||||||| | || ||| |||||||| | ||||||||||||||||||| | ||||| |||||||| ||||||||| |
|
|
| T |
5525819 |
tcagaacttggtattttaacttcctatcacatatttttccttttcagttagatatatagc--acatttatatatttcatcatttgtgt |
5525734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 15 - 215
Target Start/End: Complemental strand, 20343712 - 20343511
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| ||| | |||||||||||||||| ||||| ||||||||||||||| |||||||| |||||| |
|
|
| T |
20343712 |
cagagatggtgggagtggttgcttactttggtttgacaatattttggacatgagaaaacatcgagaccaaggacaagacatttatatacggctagcatct |
20343613 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtccttt-cagttagatatatagcataaattt-acatatttcaccatttgtgttgatattatt |
212 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||| |||||| ||||||||||||| ||| |||||| | |||||||| ||||| | |||||| |||| |
|
|
| T |
20343612 |
tcagaacttggtattttcatttcctattacatcttt-ttcctttccagttagatatattgcacaaatttcatatatttcagcatttatcttgatagtatt |
20343514 |
T |
|
| Q |
213 |
aag |
215 |
Q |
| |
|
||| |
|
|
| T |
20343513 |
aag |
20343511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 15 - 175
Target Start/End: Original strand, 5854188 - 5854348
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||| ||| ||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
5854188 |
cagatatgttggaagtggctgcttactttggtttgacaacattgttgatatgagaaaacatccagaccaaggacaagacattttcatacggctggcatct |
5854287 |
T |
|
| Q |
115 |
tcagaacttggtattttcatttgttattacatatttagtcctttcagttagatatatagca |
175 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| ||| | | ||||||| ||||||||||| |
|
|
| T |
5854288 |
tcagaacttggtatttacatttcctattacatcttttgccttttcagtctgatatatagca |
5854348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 5828158 - 5828279
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| ||||| ||||||||||||||||| ||| |||||||||||||||||||||| || |||||| |
|
|
| T |
5828158 |
cagagatggtgggagtggctgcttactttggtttaacaatattgtggacatgagaaaacatcctgacgtaggacaagacatttacatacgactcgcatct |
5828257 |
T |
|
| Q |
115 |
tcagaacttggtattttcattt |
136 |
Q |
| |
|
|| ||||||||||||||||||| |
|
|
| T |
5828258 |
tccgaacttggtattttcattt |
5828279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 15 - 131
Target Start/End: Original strand, 5848887 - 5849003
Alignment:
| Q |
15 |
cagagatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatct |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| |||||||||||||||||||||| || |||||| |
|
|
| T |
5848887 |
cagagatggtgggagtggctgcttactttggtttaacaacattgtggacatgagaaaacatcctgacataggacaagacatttacatacgactcgcatct |
5848986 |
T |
|
| Q |
115 |
tcagaacttggtatttt |
131 |
Q |
| |
|
|||||||| |||||||| |
|
|
| T |
5848987 |
tcagaactcggtatttt |
5849003 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 19 - 132
Target Start/End: Original strand, 5802494 - 5802607
Alignment:
| Q |
19 |
gatggtgggagtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatcttcag |
118 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||| ||| | ||||||||||||||||||||| |||||||||||||||||||||| || |||||||||| |
|
|
| T |
5802494 |
gatggtggtagtggctgcttactttggtttaacaatattatggacatgagaaaacatccagacgtaggacaagacatttacatacgactcgcatcttcag |
5802593 |
T |
|
| Q |
119 |
aacttggtattttc |
132 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
5802594 |
aacttggtattttc |
5802607 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Complemental strand, 5446299 - 5446222
Alignment:
| Q |
222 |
taaattctcatttcactttcaagtaactatatacctgagctatttt---aagaaaaagttgtgttcaacttccaaatg |
296 |
Q |
| |
|
||||||||| ||||||||| | |||| |||||||||||||| || | ||||| ||||||||||||||||||||||| |
|
|
| T |
5446299 |
taaattctcttttcacttttatgtaagtatatacctgagcttttctaagaagaagaagttgtgttcaacttccaaatg |
5446222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 160; Significance: 3e-85; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 160; E-Value: 3e-85
Query Start/End: Original strand, 28 - 215
Target Start/End: Original strand, 25809292 - 25809479
Alignment:
| Q |
28 |
agtggctgcttactttggtttgacaacattgtcgacatgagaaaacatccagacctaggacaagacatttacatacggctggcatcttcagaacttggta |
127 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| |||||||||| ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25809292 |
agtggctgcttactctggtttgacgacattgttgacatgagaatacatcaagaccaaggacaagacatttacatacggctggcatcttcagaacttggta |
25809391 |
T |
|
| Q |
128 |
ttttcatttgttattacatatttagtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattattaag |
215 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25809392 |
ttttcatttgttattacatattttgtcctttcagttagatatatagcataaatttacatatttcaccatttgtgttgatattattaag |
25809479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 222 - 296
Target Start/End: Original strand, 25809513 - 25809590
Alignment:
| Q |
222 |
taaattctcatttcactttcaagtaactatatacctgagctatttt---aagaaaaagttgtgttcaacttccaaatg |
296 |
Q |
| |
|
||||||||| ||||||||| | |||| |||||||||||||| || | ||||| ||||||||||||||||||||||| |
|
|
| T |
25809513 |
taaattctcttttcacttttatgtaagtatatacctgagcttttctaagaagaagaagttgtgttcaacttccaaatg |
25809590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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