View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12884_high_6 (Length: 331)
Name: NF12884_high_6
Description: NF12884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12884_high_6 |
 | |
|
| [»] chr7 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 20 - 331
Target Start/End: Original strand, 35387520 - 35387838
Alignment:
| Q |
20 |
agcattaccgtgttttcttatccatcacatctaaatcttatgaagtgactctttggtgtt-------gacaaatgataaggcatcatgactagtaaatta |
112 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
35387520 |
agcattaccatgttttcttatccatcacatctaaatcttatgaagtcattctttggtgttgactgttgacaaatgataaggcatcatgactagtaaatta |
35387619 |
T |
|
| Q |
113 |
caacttctttgtatggttaaatatattttttctgtgaaccataatagtgatcaacgaaatgttccttaatgtgggattactaagactcagtttgatcaat |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35387620 |
caacttctttgtatggttaaatatattttttctgtgaaccataatagtgatcaatgaaatgttccttaatgtgggattactaagactcagtttgatcaat |
35387719 |
T |
|
| Q |
213 |
atattctatgatctgtattccaaatgttgatcctactagtttaatagcatttctttcaaagttccattatgtttgatgtctgggtttgagattgcaaagc |
312 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
35387720 |
atattctatgatctgtgttccaaatgttgatcctactagtttaatagcatttctttcaaagttccattatttttgatgtctgggtttgagattgcaaagc |
35387819 |
T |
|
| Q |
313 |
aaattgttatatacacttc |
331 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
35387820 |
aaattgttatatacacttc |
35387838 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University