View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12884_low_10 (Length: 329)
Name: NF12884_low_10
Description: NF12884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12884_low_10 |
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| [»] scaffold0036 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 268; Significance: 1e-149; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 20 - 319
Target Start/End: Complemental strand, 12789921 - 12789622
Alignment:
| Q |
20 |
atttgtacttttaccaaaaatagaatctactatactaataatatgcatttgattgttatttaaaattgtatataactgctacaggtgcattggctcacta |
119 |
Q |
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| T |
12789921 |
atttgtacttttaccaaaaatagaatctactatactaataatatgcatttgattgttatttaaaattgtatataactgctacaggtacattggctcacta |
12789822 |
T |
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| Q |
120 |
caattcaaatgtcattatttaaaggttatagaggacaaaccattattttgggtgtttaaattgtaagtgtcggacacccgtttactgtacatgtcttagg |
219 |
Q |
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| T |
12789821 |
caattcaaatgtcattatttaaaggttatagaggacaaaccattattttgggtgtttaaattgtaagtgtcggacacccgtttactgtacatgtcttagg |
12789722 |
T |
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| Q |
220 |
gatttgtagtctagattctggcgtgtcgatcgtttttgctttgagttcggaagtcagggtctagtttcatgtttttgagatggttacggtgttctctctg |
319 |
Q |
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| T |
12789721 |
gatttgtagtctagattctggtggacagatcgtttttgctttgagtttggaagtcagggtctagtttcatgtttttgagatggttacagtgttctctctg |
12789622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 317
Target Start/End: Complemental strand, 15841092 - 15841027
Alignment:
| Q |
252 |
tttttgctttgagttcggaagtcagggtctagtttcatgtttttgagatggttacggtgttctctc |
317 |
Q |
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| T |
15841092 |
tttttgcttcgagatcggaagttagcgtctagtttcaagtttttgtgatggttaaggtgttttctc |
15841027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0036
Description:
Target: scaffold0036; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 64480 - 64413
Alignment:
| Q |
244 |
gtcgatcgtttttgctttgagttcggaagtcagggtctagtttcatgtttttgagatggttacggtgt |
311 |
Q |
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| T |
64480 |
gtcgatcgcttttgctttgagatcggaagttgacgtctagtttcatgttttttggatggttaaggtgt |
64413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0036; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 244 - 311
Target Start/End: Complemental strand, 69621 - 69554
Alignment:
| Q |
244 |
gtcgatcgtttttgctttgagttcggaagtcagggtctagtttcatgtttttgagatggttacggtgt |
311 |
Q |
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| T |
69621 |
gtcgatcgcttttgctttgagatcggaagttgacgtctagtttcatgttttttggatggttaaggtgt |
69554 |
T |
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