View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12884_low_11 (Length: 313)
Name: NF12884_low_11
Description: NF12884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12884_low_11 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 18 - 302
Target Start/End: Original strand, 37596912 - 37597196
Alignment:
| Q |
18 |
catgtaaggtcacaagatggctatggcatttcccaaaccgaatactatgaatgaaggaaagtatccacttgaaattcctactttccgaaacaagccacca |
117 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37596912 |
catgtaaggtcacaagatgactttggcatttcccaaaccgaatactatgaatgaaggaaagtatccacttgaaattcctactttccgaaacaagccacca |
37597011 |
T |
|
| Q |
118 |
ccgttcattgatgatgcaaatctcatgtttttgaaatgcctgcactgcaatgcttctcttccactttctttcttctcaacatgcaccaataaaaagtagg |
217 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37597012 |
ccgttcattgatgctgcaaatctcatgtttttgaaatgcctgcactgcaatgcttctcttccactttctttcttctcaacatgcaccaataaaaagtagg |
37597111 |
T |
|
| Q |
218 |
ccccactcaaagacaatgttagtcccacaaacccatcacatctttctttccaccgtccacctcatacgattcgattcctttgctt |
302 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
37597112 |
ccccactcaaagacaatggtagtcccacaaacccatcacatctttctttccaccgtccacctcatacaattcgattcctttgctt |
37597196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University