View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12884_low_12 (Length: 307)
Name: NF12884_low_12
Description: NF12884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12884_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 270; Significance: 1e-151; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 14304355 - 14304632
Alignment:
| Q |
19 |
ccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaatgga |
118 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304355 |
ccatgagcctgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaatgga |
14304454 |
T |
|
| Q |
119 |
agttgaattgatgaacactaagtacttcaacagattttgccgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtgatgt |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304455 |
agttgaattgatgaacactaagtacttcaacagattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtgatgt |
14304554 |
T |
|
| Q |
219 |
gaaatcaacaaaactctgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaa |
296 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14304555 |
gaaatcaacaaaactctgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaa |
14304632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 14320746 - 14321023
Alignment:
| Q |
19 |
ccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaatgga |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||| ||||| ||||| |||| |
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| T |
14320746 |
ccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaactgaagtgattatgctcgaacgaataagcataccgagtttttgagagtgga |
14320845 |
T |
|
| Q |
119 |
agttgaattgatgaacactaagtacttcaacagattttgccgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtgatgt |
218 |
Q |
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|||| |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| |
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| T |
14320846 |
agttaaattgatgaacactaagtacttcaactgattttgctgcaaaaaggacacatatcaaaacaataccttcactagtcgtactatctttccttgatgt |
14320945 |
T |
|
| Q |
219 |
gaaatcaacaaaactctgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaa |
296 |
Q |
| |
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||||||||||||||| ||||||| ||| ||||| |||||||||||||||||||| |||| ||||| ||||| ||||| |
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| T |
14320946 |
gaaatcaacaaaactttgaatcaacaagggaccaacatacataacacaaagcctaatgactgcaatgaagcccgtgaa |
14321023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 168; E-Value: 5e-90
Query Start/End: Original strand, 19 - 290
Target Start/End: Original strand, 14282597 - 14282868
Alignment:
| Q |
19 |
ccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaatgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||| |||| |
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| T |
14282597 |
ccatgagcttgtcttgaagaacttgacaaccttaagccctttttgtaaactgaagtgattatgctcgaacgaacaagcataccaagtttctgagagtgga |
14282696 |
T |
|
| Q |
119 |
agttgaattgatgaacactaagtacttcaacagattttgccgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtgatgt |
218 |
Q |
| |
|
||||||| |||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||| || ||||||| |||||| |
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| T |
14282697 |
agttgaactgatgactactaagtacttcaagtgattttgccgcaaaaaggatcgatatcaaaacaataccttcactactcgtaccatctttccttgatgt |
14282796 |
T |
|
| Q |
219 |
gaaatcaacaaaactctgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagcc |
290 |
Q |
| |
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||||||||||||||||| ||||| ||| ||||| |||||||||||||||||| | |||| |||||| ||||| |
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| T |
14282797 |
gaaatcaacaaaactctcaatcaacaagggaccaacatacataacacaaagcttaatgattgcaaggaagcc |
14282868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 158; Significance: 4e-84; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 19 - 296
Target Start/End: Original strand, 25885428 - 25885705
Alignment:
| Q |
19 |
ccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaatgga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||| | ||||||||||||||||||||| ||||||||||| |||| ||||||||| | |||||| || |||| |
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| T |
25885428 |
ccatgagcttgtcttgaagaacttgacaacctcagaccctttttgtaaaccgaagtaattatgctcgaacgaataagcataccgattttctgcgagtgga |
25885527 |
T |
|
| Q |
119 |
agttgaattgatgaacactaagtacttcaacagattttgccgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtgatgt |
218 |
Q |
| |
|
||||| ||||||||||||| || |||||||| |||||||| |||||||||| ||||||||| ||||||||||||||| | |||||||||| |||||| |
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| T |
25885528 |
agttgtattgatgaacactcagcacttcaactgattttgctgcaaaaaggatcaatatcaaaataataccttcactagtagtactatctttccttgatgt |
25885627 |
T |
|
| Q |
219 |
gaaatcaacaaaactctgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtgaa |
296 |
Q |
| |
|
||||||||||||||||||||||| || |||||| | |||||||||||||||||| || | |||||| ||||||||||| |
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| T |
25885628 |
gaaatcaacaaaactctgaatcaacagtggaccaatatacataacacaaagcctaatcattgcaaggaagccagtgaa |
25885705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 19 - 295
Target Start/End: Original strand, 44349273 - 44349548
Alignment:
| Q |
19 |
ccatgagcttgtcttgaagaacttgacaaccttaaaccctttttgtaaaccgaagtgattatgctcgagcgaacaagcatacctagtttctgagaatgga |
118 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| |||||||||||||||| |||||||||||||||| |||| ||||||||| | |||||| || |||| |
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| T |
44349273 |
ccatgagcttgtcttgaagaacttgacaatcttagaccctttttgtaaaccaaagtgattatgctcgaacgaataagcataccgattttctgcgagtgga |
44349372 |
T |
|
| Q |
119 |
agttgaattgatgaacactaagtacttcaacagattttgccgcaaaaaggacacatatcaaaacaataccttcactagtcggactatctttctgtgatgt |
218 |
Q |
| |
|
||||| |||||||| |||| ||||||||||| |||||||| |||||||||| ||||||||| |||| |||||||||| | |||||||||| |||||| |
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|
| T |
44349373 |
agttgtattgatga-cactcagtacttcaactgattttgctgcaaaaaggatcaatatcaaaataatatcttcactagtagtactatctttccttgatgt |
44349471 |
T |
|
| Q |
219 |
gaaatcaacaaaactctgaatcagcaatggaccgacatacataacacaaagcctcatgaatgcaagaaagccagtga |
295 |
Q |
| |
|
|||||||||||||||||||||| || |||||| | |||||||||||||||||| || | |||||| |||||||||| |
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|
| T |
44349472 |
aaaatcaacaaaactctgaatcaacagtggaccaatatacataacacaaagcctaatcactgcaaggaagccagtga |
44349548 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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