View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12884_low_2 (Length: 592)

Name: NF12884_low_2
Description: NF12884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12884_low_2
NF12884_low_2
[»] chr8 (7 HSPs)
chr8 (302-576)||(34475893-34476167)
chr8 (6-216)||(34476260-34476470)
chr8 (141-198)||(33451457-33451514)
chr8 (141-216)||(17775316-17775391)
chr8 (136-187)||(43420779-43420829)
chr8 (142-204)||(39211157-39211219)
chr8 (142-198)||(15794932-15794988)
[»] chr2 (6 HSPs)
chr2 (131-198)||(14871993-14872060)
chr2 (131-188)||(14877121-14877178)
chr2 (131-164)||(18906328-18906361)
chr2 (141-171)||(2427891-2427921)
chr2 (141-198)||(30831876-30831933)
chr2 (134-198)||(33412911-33412975)
[»] chr7 (5 HSPs)
chr7 (6-63)||(36802328-36802385)
chr7 (141-171)||(26749153-26749183)
chr7 (141-174)||(2008724-2008757)
chr7 (141-174)||(28249462-28249495)
chr7 (140-188)||(42853733-42853780)
[»] chr5 (7 HSPs)
chr5 (141-198)||(31748458-31748515)
chr5 (15-66)||(13798886-13798937)
chr5 (131-183)||(14323412-14323463)
chr5 (141-198)||(16971992-16972049)
chr5 (141-198)||(32872790-32872847)
chr5 (141-210)||(37172641-37172710)
chr5 (144-197)||(38363482-38363535)
[»] chr4 (7 HSPs)
chr4 (132-183)||(8810709-8810759)
chr4 (141-198)||(39158227-39158284)
chr4 (141-198)||(41262237-41262294)
chr4 (140-188)||(10147477-10147524)
chr4 (132-172)||(14443346-14443386)
chr4 (132-172)||(19651802-19651842)
chr4 (142-198)||(42062525-42062581)
[»] scaffold0244 (1 HSPs)
scaffold0244 (17-66)||(8130-8179)
[»] chr1 (3 HSPs)
chr1 (141-204)||(611528-611591)
chr1 (141-216)||(47642499-47642574)
chr1 (141-198)||(7918954-7919011)
[»] chr3 (4 HSPs)
chr3 (142-204)||(13778548-13778610)
chr3 (135-176)||(23378141-23378181)
chr3 (17-66)||(40698503-40698552)
chr3 (141-173)||(32631451-32631483)


Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 302 - 576
Target Start/End: Complemental strand, 34476167 - 34475893
Alignment:
Q  302 atttctgaaatatcccactactcctcaattttgttccctttcaatttaggaggattgaaatggaatcatgaattactttgnnnnnnnaaattattaaata 401  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       |||||||||||||    
T  34476167 atttttgaaatatcccactactcctcaattttgttccctttcaatttaggaggattgaaatggaatcatgaattactctgtttttttaaattattaaata 34476068  T
Q  402 cagttctgtcattatttatttattattttccctgaaacatttctgtttcttcacacgcttatacggtctttcttttggtaagtaagtttaacatttccca 501  Q
    |||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34476067 cagtcctgtcattatttatttattattttccctgaaacatctctgtttcttcacacgcttatacggtctttcttttggtaagtaagtttaacatttccca 34475968  T
Q  502 ttaagttgtggggatggttgccagtgcttttgttggctaacagagacagacttggcaatatgttcggttgttcat 576  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34475967 ttaagttgtggggatagttgccggtgcttttgttggctaacagagacagacttggcaatatgttcggttgttcat 34475893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 6 - 216
Target Start/End: Complemental strand, 34476470 - 34476260
Alignment:
Q  6 agagagatgaacttcctaatgagagaaatcaaagttgcatgagggtggaaatccttatgttagacacgtcaccatcggtgatcaagtgtgacgttgactt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34476470 agagagatgaacttcctaatgagagaaatcaaagttgcatgagggtgaaaatccttatgttagacacgtcaccatcggtgatcaagtctgacgttgactt 34476371  T
Q  106 ggagcatttcattgtttgaattatctaaaagagatatgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaagcaatatt 205  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  34476370 ggagcatttcattgtttaaattatctaaaagagatatgttatttgaacaaccattttttgtgacaacttataagacaatcaaaatatacaaagcaatatt 34476271  T
Q  206 gatattgacac 216  Q
    | |||||||||    
T  34476270 ggtattgacac 34476260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 33451457 - 33451514
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||||||||||| ||| |||||||||||| | |||||||||||  ||||||||    
T  33451457 atgttatttgaacaaccctttcttgtgacaacttgttagacaatcaaattatacaaag 33451514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 17775316 - 17775391
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaagcaatattgatattgacac 216  Q
    |||||||||||||||| ||||| ||| ||||||| || |||||  |||| |||||||| ||||| ||| |||||||    
T  17775316 atgttatttgaacaactattttatgtaacaacttgtaggacaactaaaatatacaaagaaatatagatcttgacac 17775391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 136 - 187
Target Start/End: Original strand, 43420779 - 43420829
Alignment:
Q  136 gagatatgttatttgaacaaccattttttgtgacaacttataagacaatcaa 187  Q
    ||||||||||||||||||||||| ||||||| |||| |||| ||||||||||    
T  43420779 gagatatgttatttgaacaaccactttttgt-acaatttatgagacaatcaa 43420829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 39211219 - 39211157
Alignment:
Q  142 tgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaagcaatat 204  Q
    |||||||||||||| |||||||  ||||||||| | |||||||| ||| |||||||| |||||    
T  39211219 tgttatttgaacaatcatttttgttgacaacttgtgagacaatctaaatatacaaagaaatat 39211157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 15794932 - 15794988
Alignment:
Q  142 tgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||||||||||||||| || |||||||| || |||||  |||| ||||||||    
T  15794932 tgttatttgaacaaccattttatgagacaacttgtaggacaactaaaatatacaaag 15794988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 131 - 198
Target Start/End: Complemental strand, 14872060 - 14871993
Alignment:
Q  131 taaaagagatatgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||| | |||||||||||  ||||||||    
T  14872060 taaaagagaaatgttatttgaacaaccatttcttgtaacaacttgttagacaatcaaattatacaaag 14871993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 131 - 188
Target Start/End: Complemental strand, 14877178 - 14877121
Alignment:
Q  131 taaaagagatatgttatttgaacaaccattttttgtgacaacttataagacaatcaaa 188  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| | |||||| ||||    
T  14877178 taaaagagaaatgttatttgaacaaccatttcttgtgacaacttgttagacaaccaaa 14877121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 131 - 164
Target Start/End: Complemental strand, 18906361 - 18906328
Alignment:
Q  131 taaaagagatatgttatttgaacaaccatttttt 164  Q
    ||||||||||||||||||||||||||||||||||    
T  18906361 taaaagagatatgttatttgaacaaccatttttt 18906328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 171
Target Start/End: Original strand, 2427891 - 2427921
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaa 171  Q
    |||||||||||||||||||||||||||||||    
T  2427891 atgttatttgaacaaccattttttgtgacaa 2427921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 30831933 - 30831876
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||||||||| ||||| |||||||||||| | | |||||||||  ||||||||    
T  30831933 atgttatttgaacaatcatttattgtgacaacttcttatacaatcaaattatacaaag 30831876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 134 - 198
Target Start/End: Complemental strand, 33412975 - 33412911
Alignment:
Q  134 aagagatatgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    |||||| |||||||||||||||| ||||| | |||||| ||||   |||||||||| ||||||||    
T  33412975 aagagaaatgttatttgaacaactattttatttgacaatttatggaacaatcaaaatatacaaag 33412911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 6 - 63
Target Start/End: Complemental strand, 36802385 - 36802328
Alignment:
Q  6 agagagatgaacttcctaatgagagaaatcaaagttgcatgagggtggaaatccttat 63  Q
    |||||||||||||| |||||||| ||||| |||||||||||||| | |||||||||||    
T  36802385 agagagatgaactttctaatgagggaaattaaagttgcatgaggatagaaatccttat 36802328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 141 - 171
Target Start/End: Complemental strand, 26749183 - 26749153
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaa 171  Q
    |||||||||||||||||||||||||||||||    
T  26749183 atgttatttgaacaaccattttttgtgacaa 26749153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 2008724 - 2008757
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaactt 174  Q
    |||||||||||||||||||||| |||||||||||    
T  2008724 atgttatttgaacaaccattttatgtgacaactt 2008757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 174
Target Start/End: Original strand, 28249462 - 28249495
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaactt 174  Q
    ||||||||||||||||||||| ||||||||||||    
T  28249462 atgttatttgaacaaccatttcttgtgacaactt 28249495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 188
Target Start/End: Original strand, 42853733 - 42853780
Alignment:
Q  140 tatgttatttgaacaaccattttttgtgacaacttataagacaatcaaa 188  Q
    |||||||||||||||||||||||||| ||||| ||||  ||||||||||    
T  42853733 tatgttatttgaacaaccattttttg-gacaaattatgggacaatcaaa 42853780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 31748515 - 31748458
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||||||||| ||||||||||||||||||||  ||||||||||  ||||||||    
T  31748515 atgttatttgaacaatcattttttgtgacaacttattggacaatcaaattatacaaag 31748458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 13798937 - 13798886
Alignment:
Q  15 aacttcctaatgagagaaatcaaagttgcatgagggtggaaatccttatgtt 66  Q
    ||||||||||||||||||| ||||||||||||||| || |||||||| ||||    
T  13798937 aacttcctaatgagagaaagcaaagttgcatgaggatgaaaatccttttgtt 13798886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 14323412 - 14323463
Alignment:
Q  131 taaaagagatatgttatttgaacaaccattttttgtgacaacttataagacaa 183  Q
    |||| ||||||||||||||||||||| |||||||| ||||||||||| |||||    
T  14323412 taaatgagatatgttatttgaacaactattttttg-gacaacttataggacaa 14323463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 16971992 - 16972049
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||||||||| ||||| |||||||||||| | | |||||||||  ||||||||    
T  16971992 atgttatttgaacaatcatttattgtgacaacttcttatacaatcaaattatacaaag 16972049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 32872790 - 32872847
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||||||||||| ||| |||||||||||| |  ||||||||||| ||| ||||    
T  32872790 atgttatttgaacaaccctttcttgtgacaacttgttggacaatcaaaatataaaaag 32872847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 210
Target Start/End: Original strand, 37172641 - 37172710
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaagcaatattgatat 210  Q
    ||||||||||||||||||| ||||  || || ||||  ||||||||||| |||||||| ||||| |||||    
T  37172641 atgttatttgaacaaccatattttaagataatttatgggacaatcaaaatatacaaagaaatatagatat 37172710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 144 - 197
Target Start/End: Complemental strand, 38363535 - 38363482
Alignment:
Q  144 ttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaa 197  Q
    ||||||||||||||||||| ||||||||||| |  ||||| ||||| |||||||    
T  38363535 ttatttgaacaaccattttatgtgacaacttgtgggacaaccaaaatatacaaa 38363482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000006; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 132 - 183
Target Start/End: Complemental strand, 8810759 - 8810709
Alignment:
Q  132 aaaagagatatgttatttgaacaaccattttttgtgacaacttataagacaa 183  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||| ||||||    
T  8810759 aaaagagatatgttatttgaacaaccactttttgt-acaacttatgagacaa 8810709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 141 - 198
Target Start/End: Complemental strand, 39158284 - 39158227
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||||||||||||||| ||||||||||||||  ||||| ||||  ||||||||    
T  39158284 atgttatttgaacaaccatttattgtgacaacttattggacaaccaaattatacaaag 39158227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 41262237 - 41262294
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||||||||||| ||| |||||||||| ||| |||||| ||||  ||||||||    
T  41262237 atgttatttgaacaaccttttcttgtgacaacctattagacaaccaaataatacaaag 41262294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 140 - 188
Target Start/End: Complemental strand, 10147524 - 10147477
Alignment:
Q  140 tatgttatttgaacaaccattttttgtgacaacttataagacaatcaaa 188  Q
    |||||||||| |||||| |||||| |||||| |||||||||||||||||    
T  10147524 tatgttatttaaacaactattttt-gtgacatcttataagacaatcaaa 10147477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 172
Target Start/End: Complemental strand, 14443386 - 14443346
Alignment:
Q  132 aaaagagatatgttatttgaacaaccattttttgtgacaac 172  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  14443386 aaaagagcaatgatatttgaacaaccattttttgtgacaac 14443346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 132 - 172
Target Start/End: Original strand, 19651802 - 19651842
Alignment:
Q  132 aaaagagatatgttatttgaacaaccattttttgtgacaac 172  Q
    |||||||  ||| ||||||||||||||||||||||||||||    
T  19651802 aaaagagtaatgatatttgaacaaccattttttgtgacaac 19651842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 142 - 198
Target Start/End: Original strand, 42062525 - 42062581
Alignment:
Q  142 tgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||||||||||||||| || |||||||| |  ||||| ||||| ||||||||    
T  42062525 tgttatttgaacaaccattttatgggacaacttgtgggacaaccaaaatatacaaag 42062581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 8130 - 8179
Alignment:
Q  17 cttcctaatgagagaaatcaaagttgcatgagggtggaaatccttatgtt 66  Q
    ||||||||||||||||| ||||||||||||||| || |||||||| ||||    
T  8130 cttcctaatgagagaaagcaaagttgcatgaggatgaaaatccttttgtt 8179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 204
Target Start/End: Original strand, 611528 - 611591
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaagcaatat 204  Q
    ||||||||||| |||||||||||  ||||||||| |  ||||||||||| |||||||| |||||    
T  611528 atgttatttgagcaaccatttttgttgacaacttgtgggacaatcaaaatatacaaagaaatat 611591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 141 - 216
Target Start/End: Original strand, 47642499 - 47642574
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaagcaatattgatattgacac 216  Q
    ||||||||||||||||||||||||| |||||||| |  ||||| ||||  |||||||| ||| | |||| ||||||    
T  47642499 atgttatttgaacaaccattttttgggacaacttgttggacaaccaaattatacaaagaaatttagatagtgacac 47642574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 141 - 198
Target Start/End: Original strand, 7918954 - 7919011
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaag 198  Q
    ||||||||||||||||| ||| |||||||||||| | |||||| ||||  ||||||||    
T  7918954 atgttatttgaacaaccctttcttgtgacaacttgttagacaaccaaattatacaaag 7919011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 142 - 204
Target Start/End: Complemental strand, 13778610 - 13778548
Alignment:
Q  142 tgttatttgaacaaccattttttgtgacaacttataagacaatcaaaacatacaaagcaatat 204  Q
    ||||||||||||||||||||||  |||||| || | |||||||| ||| |||||||| |||||    
T  13778610 tgttatttgaacaaccatttttgttgacaatttgtgagacaatctaaatatacaaagaaatat 13778548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 176
Target Start/End: Complemental strand, 23378181 - 23378141
Alignment:
Q  135 agagatatgttatttgaacaaccattttttgtgacaacttat 176  Q
    |||||||||||||||||||||||| ||||||| |||||||||    
T  23378181 agagatatgttatttgaacaaccactttttgt-acaacttat 23378141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 66
Target Start/End: Original strand, 40698503 - 40698552
Alignment:
Q  17 cttcctaatgagagaaatcaaagttgcatgagggtggaaatccttatgtt 66  Q
    |||| |||||||||||| ||||||||||||||| || |||||||| ||||    
T  40698503 cttcataatgagagaaagcaaagttgcatgaggatgaaaatccttttgtt 40698552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 32631451 - 32631483
Alignment:
Q  141 atgttatttgaacaaccattttttgtgacaact 173  Q
    |||||||||||||||||||||| ||||||||||    
T  32631451 atgttatttgaacaaccattttatgtgacaact 32631483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University