View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12884_low_4 (Length: 526)

Name: NF12884_low_4
Description: NF12884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12884_low_4
NF12884_low_4
[»] scaffold1827 (2 HSPs)
scaffold1827 (8-181)||(258-431)
scaffold1827 (337-437)||(432-533)
[»] chr4 (9 HSPs)
chr4 (182-294)||(54357930-54358042)
chr4 (192-288)||(20459021-20459117)
chr4 (185-288)||(39195870-39195973)
chr4 (185-294)||(50533325-50533434)
chr4 (199-294)||(22450176-22450271)
chr4 (176-279)||(6724922-6725023)
chr4 (185-252)||(54357890-54357956)
chr4 (228-294)||(12766883-12766949)
chr4 (194-252)||(50533408-50533466)
[»] chr8 (11 HSPs)
chr8 (185-294)||(14547799-14547908)
chr8 (182-249)||(195678-195745)
chr8 (182-249)||(310515-310582)
chr8 (206-294)||(30112377-30112465)
chr8 (229-288)||(27976765-27976824)
chr8 (229-288)||(28034034-28034093)
chr8 (184-251)||(41175270-41175337)
chr8 (224-291)||(42662721-42662788)
chr8 (229-279)||(27966354-27966404)
chr8 (203-251)||(325225-325273)
chr8 (190-258)||(1499148-1499216)
[»] chr7 (9 HSPs)
chr7 (184-288)||(47681515-47681619)
chr7 (185-252)||(26586240-26586307)
chr7 (185-252)||(30890904-30890971)
chr7 (182-288)||(5250738-5250844)
chr7 (236-288)||(38363912-38363964)
chr7 (185-243)||(26585414-26585472)
chr7 (236-294)||(26586208-26586266)
chr7 (199-260)||(30059716-30059778)
chr7 (199-249)||(21079863-21079912)
[»] chr1 (10 HSPs)
chr1 (185-279)||(35944105-35944199)
chr1 (185-294)||(101476-101584)
chr1 (185-294)||(101516-101625)
chr1 (185-245)||(18323171-18323231)
chr1 (184-252)||(35944048-35944116)
chr1 (185-251)||(22816125-22816191)
chr1 (197-293)||(22819174-22819270)
chr1 (184-278)||(22816041-22816134)
chr1 (201-251)||(39217607-39217657)
chr1 (185-258)||(18005140-18005213)
[»] chr3 (6 HSPs)
chr3 (453-514)||(6833728-6833789)
chr3 (185-288)||(45362017-45362119)
chr3 (185-288)||(36750742-36750845)
chr3 (185-294)||(45361970-45362079)
chr3 (416-486)||(6821852-6821920)
chr3 (182-240)||(30675076-30675134)
[»] chr5 (2 HSPs)
chr5 (210-294)||(12442258-12442342)
chr5 (184-233)||(42233325-42233374)
[»] scaffold0445 (1 HSPs)
scaffold0445 (440-513)||(8253-8326)
[»] chr6 (3 HSPs)
chr6 (199-281)||(6136790-6136872)
chr6 (236-294)||(2284826-2284884)
chr6 (224-291)||(2284819-2284886)
[»] scaffold0032 (1 HSPs)
scaffold0032 (185-289)||(47229-47333)
[»] chr2 (4 HSPs)
chr2 (224-291)||(7833320-7833387)
chr2 (184-294)||(44004835-44004944)
chr2 (203-279)||(25903701-25903777)
chr2 (224-276)||(36452427-36452479)


Alignment Details
Target: scaffold1827 (Bit Score: 74; Significance: 1e-33; HSPs: 2)
Name: scaffold1827
Description:

Target: scaffold1827; HSP #1
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 8 - 181
Target Start/End: Original strand, 258 - 431
Alignment:
Q  8 gagcacagacctttttaaatataaaaaagtggagtgttcggagtttaaactacggttcatactcatattatgctatattcttaccaattaagctaaactc 107  Q
    |||| ||||| |||||||||||| | || |||||||||   |||||||||| || |||||    ||||||| | ||||||||||||||  || |||||||    
T  258 gagctcagacatttttaaatatagagaaatggagtgtttaaagtttaaactccgattcatgtctatattatacaatattcttaccaatcgagttaaactc 357  T
Q  108 acgttgattatttatatttaagtgaccaacaactaagctaaactgacatgaattatttatatttaagttaatta 181  Q
    |||| ||||||||||||||||  | ||||||||||||||||  |||||||||||||||||||||||||||||||    
T  358 acgtggattatttatatttaaccgtccaacaactaagctaagttgacatgaattatttatatttaagttaatta 431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1827; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 337 - 437
Target Start/End: Original strand, 432 - 533
Alignment:
Q  337 tatatgataatgttatttttcagcggttacttatgataatgagttttcctaagggnnnnnnnctttttagagtgt-aagaaaacaattttgttgtctaaa 435  Q
    ||||||||||||||||||||| | |||||||||||||||||||||||||||||||       |||||| |||||| || |||||||||||||||| ||||    
T  432 tatatgataatgttatttttctggggttacttatgataatgagttttcctaagggaaaaaaacttttttgagtgtaaaaaaaacaattttgttgtttaaa 531  T
Q  436 aa 437  Q
    ||    
T  532 aa 533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 73; Significance: 4e-33; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 182 - 294
Target Start/End: Complemental strand, 54358042 - 54357930
Alignment:
Q  182 atatactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaact 281  Q
    |||||||||||||| | ||||||||||||||| ||| |||| ||||||||||| |||||||||||||||||||||| || ||||| ||||||||||||||    
T  54358042 atatactccctccgatctcaaatataagaaaaaattatctttttaggttcatttaataattaatgtatctgttttacaatgtagaccagatacattaact 54357943  T
Q  282 actcaataaacct 294  Q
    ||||||| |||||    
T  54357942 actcaatgaacct 54357930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 20459021 - 20459117
Alignment:
Q  192 tccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaat 288  Q
    |||||| ||||||||||||||| |||||||| |||||||||||||||||||||| ||| ||||||| || ||||| |||||||||||||||||||||    
T  20459021 tccggtctcaaatataagaaaagattctctttttaggttcattaaataattaatatatatgttttaaaatgtagaccagatacattaactactcaat 20459117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 39195870 - 39195973
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactact 284  Q
    ||||||||||| | | ||||||||||||| |||||||| ||||||| |||||||| |||||||||||| |||| || |||||||||||||||||||||||    
T  39195870 tactccctccgatcttaaatataagaaaagattctctttttaggttaattaaatagttaatgtatctgctttacaatgtagatcagatacattaactact 39195969  T
Q  285 caat 288  Q
    ||||    
T  39195970 caat 39195973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 50533325 - 50533434
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactact 284  Q
    |||||||||  || ||||||||||||||| |||||||| |||| ||||||||||||||||| |||||| |||| || ||||| |||||||||||||||||    
T  50533325 tactccctctagtctcaaatataagaaaagattctctttttagattcattaaataattaatatatctgctttacaatgtagaccagatacattaactact 50533424  T
Q  285 caataaacct 294  Q
    |||| |||||    
T  50533425 caatgaacct 50533434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 199 - 294
Target Start/End: Complemental strand, 22450271 - 22450176
Alignment:
Q  199 tcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaataaacct 294  Q
    ||||||||||||||| |||||||| |||| ||||||||||||||||| ||| | ||||| || ||||| ||||||||||||| ||| ||| |||||    
T  22450271 tcaaatataagaaaaaattctctttttagattcattaaataattaatatatttattttacaatgtagaccagatacattaacaacttaatgaacct 22450176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 176 - 279
Target Start/End: Complemental strand, 6725023 - 6724922
Alignment:
Q  176 taattaatatactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagataca 275  Q
    |||||||  ||||||||||| | ||| |||||| |||| ||||| || ||||||||||| |||||||||| ||||||||||  || ||||| ||||||||    
T  6725023 taattaaagtactccctccgatctcatatataa-aaaagattctttt-ttaggttcattgaataattaatatatctgtttttcaatgtagaccagataca 6724926  T
Q  276 ttaa 279  Q
    ||||    
T  6724925 ttaa 6724922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 185 - 252
Target Start/End: Original strand, 54357890 - 54357956
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctg 252  Q
    |||||||| |||| ||||||||||||||||||||| || ||||||||||| | || ||||||||||||    
T  54357890 tactcccttcggtctcaaatataagaaaatattct-tttttaggttcattgagtagttaatgtatctg 54357956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 228 - 294
Target Start/End: Original strand, 12766883 - 12766949
Alignment:
Q  228 gttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaataaacct 294  Q
    ||||||| ||||||||||||||||  |||| || ||||| |||||||||||| || ||||| |||||    
T  12766883 gttcattgaataattaatgtatctactttacaatgtagaccagatacattaattattcaatgaacct 12766949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 194 - 252
Target Start/End: Complemental strand, 50533466 - 50533408
Alignment:
Q  194 cggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctg 252  Q
    |||| ||||||||||||||||||| | || ||||||||||| | || ||||||||||||    
T  50533466 cggtctcaaatataagaaaatattatttttttaggttcattgagtagttaatgtatctg 50533408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 66; Significance: 6e-29; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 185 - 294
Target Start/End: Complemental strand, 14547908 - 14547799
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactact 284  Q
    ||||||||||  | ||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||| |||||| ||||||||||    
T  14547908 tactccctccaatctcaaatacaagaaaatattctctttttaggttcattaaataattaatgtatctgctttacaatgtagaccagatagattaactact 14547809  T
Q  285 caataaacct 294  Q
    |||| |||||    
T  14547808 caatgaacct 14547799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 195745 - 195678
Alignment:
Q  182 atatactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtat 249  Q
    ||||||||| |||| | ||||||||||||||| ||| |||| |||| |||||||||||||||||||||    
T  195745 atatactccatccgatctcaaatataagaaaaaattatctttttagattcattaaataattaatgtat 195678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 249
Target Start/End: Complemental strand, 310582 - 310515
Alignment:
Q  182 atatactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtat 249  Q
    ||||||||| |||| | ||||||||||||||| ||| |||| |||| |||||||||||||||||||||    
T  310582 atatactccatccgatctcaaatataagaaaaaattatctttttagattcattaaataattaatgtat 310515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 294
Target Start/End: Complemental strand, 30112465 - 30112377
Alignment:
Q  206 taagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaataaacct 294  Q
    |||||||||||||| || ||| ||||||| |||||||||||||||| ||| | || ||||| || ||||||||| || ||||| |||||    
T  30112465 taagaaaatattcttttgttaagttcattgaataattaatgtatctatttaacaatgtagaccaaatacattaattattcaatgaacct 30112377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 27976765 - 27976824
Alignment:
Q  229 ttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaat 288  Q
    |||||||||||||||||| ||||| | ||||| ||||| |||||||||||| || |||||    
T  27976765 ttcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaat 27976824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 229 - 288
Target Start/End: Original strand, 28034034 - 28034093
Alignment:
Q  229 ttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaat 288  Q
    |||||||||||||||||| ||||| | ||||| ||||| |||||||||||| || |||||    
T  28034034 ttcattaaataattaatgcatctggtctataatgtagaccagatacattaattattcaat 28034093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 251
Target Start/End: Complemental strand, 41175337 - 41175270
Alignment:
Q  184 atactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatct 251  Q
    ||||||| |||||| ||| |||||| |||| ||||  || ||||||||||||| ||||||||||||||    
T  41175337 atactccatccggtctcatatataaaaaaagattccatttttaggttcattaattaattaatgtatct 41175270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 42662788 - 42662721
Alignment:
Q  224 ttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaataaa 291  Q
    |||||||||||||||||| |||||||| | | |||||  | ||||||||||||||| || ||||||||    
T  42662788 ttaggttcattaaataatcaatgtatcaggtctataaatttgatcagatacattaattattcaataaa 42662721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 229 - 279
Target Start/End: Original strand, 27966354 - 27966404
Alignment:
Q  229 ttcattaaataattaatgtatctgttttataacgtagatcagatacattaa 279  Q
    |||||||||||||||||  ||||| | ||||| ||||||||||||||||||    
T  27966354 ttcattaaataattaatacatctggtctataatgtagatcagatacattaa 27966404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 325225 - 325273
Alignment:
Q  203 atataagaaaatattctcttcttaggttcattaaataattaatgtatct 251  Q
    ||||||||||||||||| || |||| | |||| ||||||||||||||||    
T  325225 atataagaaaatattctttttttagatacatttaataattaatgtatct 325273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 190 - 258
Target Start/End: Original strand, 1499148 - 1499216
Alignment:
Q  190 cctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttat 258  Q
    |||| ||| ||| |||||||||||||||||||| |||  ||| || ||||||||| |||| ||||||||    
T  1499148 cctctggtctcatatataagaaaatattctctttttaaattcgttgaataattaacgtatttgttttat 1499216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 6e-26; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 184 - 288
Target Start/End: Original strand, 47681515 - 47681619
Alignment:
Q  184 atactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactac 283  Q
    ||||| |||||||| ||||||||||||||| |||||||| ||||||| ||||||||||||||||||||| |||| ||  | || ||||||||||||||||    
T  47681515 atacttcctccggtctcaaatataagaaaagattctctttttaggtttattaaataattaatgtatctgctttacaatatcgaccagatacattaactac 47681614  T
Q  284 tcaat 288  Q
    |||||    
T  47681615 tcaat 47681619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 26586307 - 26586240
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctg 252  Q
    ||||||||||||| |||||||| |||||||||||| || ||||||||||| | || ||||||||||||    
T  26586307 tactccctccggtctcaaatattagaaaatattctttttttaggttcattgagtagttaatgtatctg 26586240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 30890971 - 30890904
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctg 252  Q
    ||||||||||||| ||| ||||||||||||||| | || ||||||||||| |||| ||||||||||||    
T  30890971 tactccctccggtctcatatataagaaaatattttttttttaggttcattgaatagttaatgtatctg 30890904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 182 - 288
Target Start/End: Original strand, 5250738 - 5250844
Alignment:
Q  182 atatactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaact 281  Q
    |||||||||||||||| ||| || |||||||||||| | || ||||||||||| | |||||||||||| |  | ||||   ||| |||||||||||||||    
T  5250738 atatactccctccggtctcatatgtaagaaaatattatttttttaggttcattgagtaattaatgtatatagtctatattataggtcagatacattaact 5250837  T
Q  282 actcaat 288  Q
    | |||||    
T  5250838 attcaat 5250844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 288
Target Start/End: Original strand, 38363912 - 38363964
Alignment:
Q  236 aataattaatgtatctgttttataacgtagatcagatacattaactactcaat 288  Q
    ||||||||||||||||| ||||||| |||||  ||||||||||||||||||||    
T  38363912 aataattaatgtatctgctttataatgtagacaagatacattaactactcaat 38363964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 243
Target Start/End: Original strand, 26585414 - 26585472
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataatta 243  Q
    |||||||||| || ||||||||||||||| |||||||| || |||| ||||||||||||    
T  26585414 tactccctccagtctcaaatataagaaaaaattctctttttcggttaattaaataatta 26585472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 26586208 - 26586266
Alignment:
Q  236 aataattaatgtatctgttttataacgtagatcagatacattaactactcaataaacct 294  Q
    |||||||||||||||| ||||| || ||||  ||||||||||||||||||||| |||||    
T  26586208 aataattaatgtatctattttacaatgtaggccagatacattaactactcaatgaacct 26586266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 30059716 - 30059778
Alignment:
Q  199 tcaaatataagaaaata-ttctcttcttaggttcattaaataattaatgtatctgttttataa 260  Q
    ||||||||||||||| | |||| || ||||||| ||||||||||||||||||||| |||||||    
T  30059716 tcaaatataagaaaaaaattctttttttaggttaattaaataattaatgtatctgatttataa 30059778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 199 - 249
Target Start/End: Complemental strand, 21079912 - 21079863
Alignment:
Q  199 tcaaatataagaaaatattctcttcttaggttcattaaataattaatgtat 249  Q
    ||||||||||||||||||||| || ||||||||||| || |||||||||||    
T  21079912 tcaaatataagaaaatattct-tttttaggttcattgaacaattaatgtat 21079863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 59; Significance: 9e-25; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 185 - 279
Target Start/End: Complemental strand, 35944199 - 35944105
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaa 279  Q
    ||||||||||| | ||||||||||||||||||||| || ||||| ||||| ||||||||||||||||| |||| || ||||||||||||||||||    
T  35944199 tactccctccgatctcaaatataagaaaatattctttttttaggatcattgaataattaatgtatctgctttacaatgtagatcagatacattaa 35944105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 101476 - 101584
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactact 284  Q
    ||||| |||||||  || ||||||||||| ||||| || ||||||||||| ||||||||||||||||| |||| || ||| | |||||||||||| || |    
T  101476 tactctctccggtcacatatataagaaaagattctttt-ttaggttcattgaataattaatgtatctggtttacaatgtaaaccagatacattaattatt 101574  T
Q  285 caataaacct 294  Q
    |||| |||||    
T  101575 caatgaacct 101584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 185 - 294
Target Start/End: Complemental strand, 101625 - 101516
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactact 284  Q
    ||||||||||||| | | ||||| ||||| ||||| ||| |||||||||| ||||||||||||||||| |||| |  ||| | |||||||||||| || |    
T  101625 tactccctccggtcttatatatacgaaaagattcttttcgtaggttcattgaataattaatgtatctggtttacattgtaaaccagatacattaattatt 101526  T
Q  285 caataaacct 294  Q
    |||| |||||    
T  101525 caatgaacct 101516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 185 - 245
Target Start/End: Original strand, 18323171 - 18323231
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaat 245  Q
    ||||||| ||||||||| ||||||||||||||||| || |||||||| || ||||||||||    
T  18323171 tactcccaccggtttcatatataagaaaatattctttttttaggttcgttgaataattaat 18323231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 184 - 252
Target Start/End: Original strand, 35944048 - 35944116
Alignment:
Q  184 atactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctg 252  Q
    ||||||| ||||||||||||||||| |||| ||||  || |||||||| || |||||||||||||||||    
T  35944048 atactccttccggtttcaaatataataaaagattcattttttaggttcgttgaataattaatgtatctg 35944116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 185 - 251
Target Start/End: Complemental strand, 22816191 - 22816125
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatct 251  Q
    ||||||||||||| ||| ||||||||||||||||| ||  |||||||||| || || ||||||||||    
T  22816191 tactccctccggtctcatatataagaaaatattctttttgtaggttcattgaacaactaatgtatct 22816125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 293
Target Start/End: Complemental strand, 22819270 - 22819174
Alignment:
Q  197 tttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaataaacc 293  Q
    ||||| ||||||||||| ||||| || ||| ||||||| |||| |||||||||||| |||| || | ||| || ||||||||| || ||||| ||||    
T  22819270 tttcatatataagaaaagattctttttttacgttcattgaatagttaatgtatctgatttacaatgaagaccatatacattaattattcaatgaacc 22819174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 278
Target Start/End: Original strand, 22816041 - 22816134
Alignment:
Q  184 atactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacatta 278  Q
    |||||||||||||| ||  || |||||||| ||||| || ||||||||| | ||||||||||||||||  |||| || | |||| ||||||||||    
T  22816041 atactccctccggtctcgtatgtaagaaaagattctttt-ttaggttcaatgaataattaatgtatctactttacaatgaagattagatacatta 22816134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 201 - 251
Target Start/End: Original strand, 39217607 - 39217657
Alignment:
Q  201 aaatataagaaaatattctcttcttaggttcattaaataattaatgtatct 251  Q
    |||||||||| |||| ||| || ||||||||||| ||||||||||||||||    
T  39217607 aaatataagagaataatctttttttaggttcattgaataattaatgtatct 39217657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 185 - 258
Target Start/End: Original strand, 18005140 - 18005213
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttat 258  Q
    |||||| |||||| ||| ||||||| ||| |||||  | |||  |||||||||||||||||||||||| |||||    
T  18005140 tactccgtccggtctcatatataagcaaagattcttgttttaaattcattaaataattaatgtatctggtttat 18005213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 453 - 514
Target Start/End: Original strand, 6833728 - 6833789
Alignment:
Q  453 tattctcaatcattctaaaaggcgataaattgtctttagtccacttattaatattctttttg 514  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6833728 tattctcaatcattctaaaaggcgataaattgtcattagtccacttattaatattctttttg 6833789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 185 - 288
Target Start/End: Complemental strand, 45362119 - 45362017
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactact 284  Q
    ||||||||||||| ||||||||||||||| ||||| || ||||||| ||| ||||||||||||||||| |||| || ||||| |||||||||||| ||||    
T  45362119 tactccctccggtctcaaatataagaaaagattctttt-ttaggttaattgaataattaatgtatctgctttacaatgtagaccagatacattaattact 45362021  T
Q  285 caat 288  Q
    ||||    
T  45362020 caat 45362017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 185 - 288
Target Start/End: Original strand, 36750742 - 36750845
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactact 284  Q
    ||||||||||| | ||||||||||||||| ||||  ||  ||| |   || ||||||||||||||||| |||| || |||||||||||||||||||||||    
T  36750742 tactccctccgatctcaaatataagaaaagattccttttatagttcttttgaataattaatgtatctgctttacaatgtagatcagatacattaactact 36750841  T
Q  285 caat 288  Q
    ||||    
T  36750842 caat 36750845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 185 - 294
Target Start/End: Original strand, 45361970 - 45362079
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactact 284  Q
    ||||||||||||| ||||||||||||||| ||||  || ||| ||||||| | ||||||||||||||| | || |  ||| | |||||||||||| || |    
T  45361970 tactccctccggtctcaaatataagaaaagattcattttttaagttcattgagtaattaatgtatctggtctacattgtaaagcagatacattaattatt 45362069  T
Q  285 caataaacct 294  Q
    |||| |||||    
T  45362070 caattaacct 45362079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 486
Target Start/End: Complemental strand, 6821920 - 6821852
Alignment:
Q  416 aaacaattttgttgtctaaaaattatcaagtcttacatattctcaatcattctaaaaggcgataaattgtc 486  Q
    |||||||||||| ||  |||||  ||||| ||||| ||||| |||||||||||||||||||||||||||||    
T  6821920 aaacaattttgtggttaaaaaa--atcaactcttatatattttcaatcattctaaaaggcgataaattgtc 6821852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 182 - 240
Target Start/End: Original strand, 30675076 - 30675134
Alignment:
Q  182 atatactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataa 240  Q
    |||||||||||||||| |||||| ||||||| | ||| ||| ||||||||||| |||||    
T  30675076 atatactccctccggtctcaaatgtaagaaacttttcactttttaggttcatttaataa 30675134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 1e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 294
Target Start/End: Original strand, 12442258 - 12442342
Alignment:
Q  210 aaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaataaacct 294  Q
    |||| |||||||| ||| |||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||| |||||    
T  12442258 aaaagattctctttttatgttcattaaataattaatgtatctgttttacaatgtagaccagatacattaactactcaatgaacct 12442342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 42233374 - 42233325
Alignment:
Q  184 atactccctccggtttcaaatataagaaaatattctcttcttaggttcat 233  Q
    |||||||||||||| ||||||||||||||| ||||| || ||||||||||    
T  42233374 atactccctccggtctcaaatataagaaaagattctttttttaggttcat 42233325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0445 (Bit Score: 54; Significance: 9e-22; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 440 - 513
Target Start/End: Complemental strand, 8326 - 8253
Alignment:
Q  440 atcaagtcttacatattctcaatcattctaaaaggcgataaattgtctttagtccacttattaatattcttttt 513  Q
    ||||| |||||||||||||||||||||  |||||||||||||||||| |||||| |||||||||||||||||||    
T  8326 atcaactcttacatattctcaatcattgaaaaaggcgataaattgtcattagtctacttattaatattcttttt 8253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 199 - 281
Target Start/End: Original strand, 6136790 - 6136872
Alignment:
Q  199 tcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaact 281  Q
    ||||||||||||||| ||||| || | |||||||||||||||||| ||||||||||||  ||  |||||||||||||||||||    
T  6136790 tcaaatataagaaaagattctattttcaggttcattaaataattattgtatctgttttgcaatatagatcagatacattaact 6136872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 294
Target Start/End: Original strand, 2284826 - 2284884
Alignment:
Q  236 aataattaatgtatctgttttataacgtagatcagatacattaactactcaataaacct 294  Q
    ||||||||||||||||| |||||||  ||||||||||||||||| || | |||||||||    
T  2284826 aataattaatgtatctgatttataatatagatcagatacattaattatttaataaacct 2284884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Complemental strand, 2284886 - 2284819
Alignment:
Q  224 ttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaataaa 291  Q
    ||||||| ||||||||||||||||||||| | ||||   || |||||||||||||| || ||||||||    
T  2284886 ttaggtttattaaataattaatgtatctgatctatattataaatcagatacattaattattcaataaa 2284819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 185 - 289
Target Start/End: Original strand, 47229 - 47333
Alignment:
Q  185 tactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactact 284  Q
    |||||||||  || ||| ||||||||||||||| | || ||||||||||| |||||||||| | ||||||||| || ||||| || ||||||||| || |    
T  47229 tactccctctagtctcatatataagaaaatattatttttttaggttcattgaataattaatatttctgttttaaaatgtagaccaaatacattaattatt 47328  T
Q  285 caata 289  Q
    |||||    
T  47329 caata 47333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 224 - 291
Target Start/End: Original strand, 7833320 - 7833387
Alignment:
Q  224 ttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactactcaataaa 291  Q
    |||| |||||| ||||||| ||||||||| |||| ||  |||||||||||||||||||| | ||||||    
T  7833320 ttagattcattgaataattgatgtatctgatttaaaatatagatcagatacattaactatttaataaa 7833387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 184 - 294
Target Start/End: Original strand, 44004835 - 44004944
Alignment:
Q  184 atactccctccggtttcaaatataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaactac 283  Q
    ||||||| |||||| ||  || |||||||||||||| || |||| |||||||| |||||||||||| |  | ||||   ||||| | ||||||||||||     
T  44004835 atactccttccggtctcgtatgtaagaaaatattctttttttagattcattaagtaattaatgtatatagtctatattatagat-aaatacattaactat 44004933  T
Q  284 tcaataaacct 294  Q
    |||||||||||    
T  44004934 tcaataaacct 44004944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 203 - 279
Target Start/End: Original strand, 25903701 - 25903777
Alignment:
Q  203 atataagaaaatattctcttcttaggttcattaaataattaatgtatctgttttataacgtagatcagatacattaa 279  Q
    ||||||||||| |||||||| |||| | |||| ||||||||||||||||  |||| || | |||  |||||||||||    
T  25903701 atataagaaaagattctcttattagatacattgaataattaatgtatctcgtttacaatgaagagtagatacattaa 25903777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 224 - 276
Target Start/End: Original strand, 36452427 - 36452479
Alignment:
Q  224 ttaggttcattaaataattaatgtatctgttttataacgtagatcagatacat 276  Q
    ||||||||||||||||| ||||||||||| || | ||  ||||||||||||||    
T  36452427 ttaggttcattaaataagtaatgtatctggttaacaatatagatcagatacat 36452479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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