View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12884_low_5 (Length: 451)
Name: NF12884_low_5
Description: NF12884
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12884_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 395; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 9 - 411
Target Start/End: Complemental strand, 39803136 - 39802734
Alignment:
| Q |
9 |
agcagagaacaatcggtacgaattttcccatttctcgcatttttaactccaacacgacccaacttggtcatggcagtgatgaaattggcattgaaaacgt |
108 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39803136 |
agcacagaacaatcggtacgaattttcccatttctcgcatttttaactccaacacgacccaacttggtcatggcagtgatgaaattggcattgaaaacgt |
39803037 |
T |
|
| Q |
109 |
taccgttagtcgcgaaagagttaacagtgttccttgatcttgtgtcagtgaagaggatttgatcagaagtaaataaaccttttccttgttgaagattttt |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39803036 |
taccgttagtcgcgaaagagttaacagtgttccttgatcttgtatcagtgaagaggatttgatcagaagtaaataaaccttttccttgttgaagattttt |
39802937 |
T |
|
| Q |
209 |
gtagtaaacattgtcaaatgttctaggagttgttgggtccatgttgatggctattcttggatcaacattcctagggcacatttgttgtaactgggcagca |
308 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39802936 |
gtagtaaacattgtcaaatgttctaggagttgttgggtccatgttgatggctattcttggatcaacattcctagggcacatttgttgtaactgggcagca |
39802837 |
T |
|
| Q |
309 |
tattgtttgttcaatgtggggtccactggagtttgaattctattggagaatctgtcacagtgagagaatccaagagtgtgtgcacctgtaaaatatgaaa |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39802836 |
tattgtttgttcaatgtggggtccactggagtttgaattctattggagaatctgtcacagtgagagaatccaagagtgtgtgcacctgtaaaatatgaaa |
39802737 |
T |
|
| Q |
409 |
aag |
411 |
Q |
| |
|
||| |
|
|
| T |
39802736 |
aag |
39802734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University