View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12885_low_1 (Length: 602)
Name: NF12885_low_1
Description: NF12885
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12885_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 32 - 584
Target Start/End: Original strand, 41021955 - 41022507
Alignment:
| Q |
32 |
attttaaatagtttgtaaaatgaacaattgtttctaagtgatagtgagatgaatgttaaatgtagctagaaataaaacaagacattctatttctatcttc |
131 |
Q |
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| T |
41021955 |
attttaaatagtttgtaaaatgaacaattgtttctaagtgatagtgagatgaatgttaaatgtagctagaaataaaacaagacattctatttctatcttc |
41022054 |
T |
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| Q |
132 |
catggaacctaagttcaatgcaatgtatcacttctatgatatattcatctcagacacgatttccaaaaccagtgtttccaaaacatttttctccacctcc |
231 |
Q |
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| T |
41022055 |
catggaacctaagttcaatgcaatgtatcacttctatgatatattcatctcagacacgatttccaaaaccagtgtttccaaaacatttttctccacctcc |
41022154 |
T |
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| Q |
232 |
attgcaatttcttctgcatcattatggatattcatccatgattcgcgtctggccaagtccctttcaacaagctgttgtaatgttattggtgatggatgat |
331 |
Q |
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| T |
41022155 |
attgcaatttcttctgcatcattatggatattcatccatgattcgcgtctggccaagtccctttcaacaagctgttgtaatgttattggtgatggatgat |
41022254 |
T |
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| Q |
332 |
ggaaaaagtgaaggttaacaagttcattaatctgtctaaccaaaactttcttcacaacacatgcttggaagtttgaatttcttgatgaaaaatggggcga |
431 |
Q |
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| T |
41022255 |
ggaaaaagtgaaggttaacaagttcattaatctgtctaaccaaaactttcttcacaacacatgcttggaagtttgaatttcttgatgaaaaatggggcga |
41022354 |
T |
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| Q |
432 |
aaaaccactattctggtataactccatgaaacattcgatgatatactcatgcatgatggtaatgtcaaaaagttggtcagtcaatccattcacttcatca |
531 |
Q |
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| T |
41022355 |
aaaaccactattctggtataactccatgaaacattcgatgatatactcatgcatgatggtactgtcaaaaaattggtcagtcaatccattcacttcatca |
41022454 |
T |
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| Q |
532 |
aaagtggatgaagaatccatcaataagtttgataaatggctcttcataggttc |
584 |
Q |
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| T |
41022455 |
aaagtggatgaagaatccatcaataagtttgataaatggctcttcataggttc |
41022507 |
T |
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